Literature DB >> 16833532

Oxo-hydroxy tautomerism of 5-fluorouracil: water-assisted proton transfer.

Nadezhda Markova1, Venelin Enchev, Iliana Timtcheva.   

Abstract

Post-Hartree-Fock ab initio quantum chemical calculations were performed for 5-fluorouracil in the gas phase and in a three-water cluster. Full geometry optimizations of the 5-fluorouracil-water complexes were carried out at the MP2/6-31+G(d,p) level of theory. MP4/6-31+G(d,p)//MP2/6-31+G(d,p) and MP4/6-31++G(d,p)//MP2/6-31+G(d,p) single-point calculations were performed to obtain more accurate energies. In water solution, 5-fluorouracil exists mainly in the 2,4-dioxo form (A). We propose that the populations of the 2-hydroxy-4-oxo (B) and 4-hydroxy-2-oxo (D) tautomers are 1 x 10(-4)% and 3.9 x 10(-8)%, respectively, on the basis of the relative stabilities of the tautomers calculated at the MP4/6-31++G(d,p)//MP2/6-31+G(d,p) level of theory. A profound difference between isolated and hydrated 5-fluorouracil is noted for the height of the tautomerization barrier. In the absence of water, the process of proton transfer is very slow. The addition of water molecules decreases the barrier by 2.3 times, making the process much faster. The minimum energy path (MP2/6-31+G(d,p)) for water-assisted proton transfer in trihydrated 5-fluorouracil was followed. CNDO/S-CI calculations predict singlet pi-pi(*) electron transitions at 312 nm for B and at 318 nm for D. The fluorescence spectrum of 5-fluorouracil in water confirms the presence of the hydroxy tautomer.

Entities:  

Year:  2005        PMID: 16833532     DOI: 10.1021/jp046132m

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  8 in total

1.  Investigation of the intermolecular proton transfer in the supersystems adenine-methanol/ethanol/i-propanol: MP2 and DFT levels study.

Authors:  Vassil B Delchev; Ivan G Shterev; Hans Mikosch; Nikolay T Kochev
Journal:  J Mol Model       Date:  2007-07-13       Impact factor: 1.810

2.  Theoretical studies on the tautomerism of tetrazole selenone.

Authors:  Alireza Najafi Chermhini; Mostafa Abedi; Hossein Farrokhpour; Abbas Teimouri; Bahareh Reisi
Journal:  J Mol Model       Date:  2013-08-04       Impact factor: 1.810

3.  Reaction Pathway and Free Energy Barrier for Urea Elimination in Aqueous Solution.

Authors:  Min Yao; Xi Chen; Chang-Guo Zhan
Journal:  Chem Phys Lett       Date:  2015-04-01       Impact factor: 2.328

4.  DFT and MP2 study of low barrier proton transfer in hydrazide schiff base tautomers via water bridges and in the gas.

Authors:  Hossein Tavakol; Hossein Farrokhpour
Journal:  J Mol Model       Date:  2013-05-25       Impact factor: 1.810

5.  Stepwise mechanism and H2O-assisted hydrolysis in atomic layer deposition of SiO2 without a catalyst.

Authors:  Guo-Yong Fang; Li-Na Xu; Lai-Guo Wang; Yan-Qiang Cao; Di Wu; Ai-Dong Li
Journal:  Nanoscale Res Lett       Date:  2015-02-18       Impact factor: 4.703

6.  5-Fluorouracil-Complete Insight into Its Neutral and Ionised Forms.

Authors:  Justyna Wielińska; Andrzej Nowacki; Beata Liberek
Journal:  Molecules       Date:  2019-10-13       Impact factor: 4.411

7.  On Complex Formation between 5-Fluorouracil and β-Cyclodextrin in Solution and in the Solid State: IR Markers and Detection of Short-Lived Complexes by Diffusion NMR.

Authors:  Daria L Melnikova; Zilya F Badrieva; Mikhail A Kostin; Corina Maller; Monika Stas; Aneta Buczek; Malgorzata A Broda; Teobald Kupka; Anne-Marie Kelterer; Peter M Tolstoy; Vladimir D Skirda
Journal:  Molecules       Date:  2020-12-03       Impact factor: 4.411

Review 8.  Chemistry of Fluorinated Pyrimidines in the Era of Personalized Medicine.

Authors:  William H Gmeiner
Journal:  Molecules       Date:  2020-07-29       Impact factor: 4.411

  8 in total

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