Literature DB >> 16833420

Density functional theory predictions of isotropic hyperfine coupling constants.

L Hermosilla1, P Calle, J M García de la Vega, C Sieiro.   

Abstract

The reliability of density functional theory (DFT) in the determination of the isotropic hyperfine coupling constants (hfccs) of the ground electronic states of organic and inorganic radicals is examined. Predictions using several DFT methods and 6-31G, TZVP, EPR-III and cc-pVQZ basis sets are made and compared to experimental values. The set of 75 radicals here studied was selected using a wide range of criteria. The systems studied are neutral, cationic, anionic; doublet, triplet, quartet; localized, and conjugated radicals, containing 1H, 9Be, 11B, 13C, 14N, 17O, 19F, 23Na, 25Mg, 27Al, 29Si, 31P, 33S, and 35Cl nuclei. The considered radicals provide 241 theoretical hfcc values, which are compared with 174 available experimental ones. The geometries of the studied systems are obtained by theoretical optimization using the same functional and basis set with which the hfccs were calculated. Regression analysis is used as a basic and appropriate methodology for this kind of comparative study. From this analysis, we conclude that DFT predictions of the hfccs are reliable for B3LYP/TZVP and B3LYP/EPR-III combinations. Both functional/basis set scheme are the more useful theoretical tools for predicting hfccs if compared to other much more expensive methods.

Entities:  

Year:  2005        PMID: 16833420     DOI: 10.1021/jp0466901

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  15 in total

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Journal:  Biochemistry       Date:  2006-06-13       Impact factor: 3.162

3.  Prototropic equilibria in DNA containing one-electron oxidized GC: intra-duplex vs. duplex to solvent deprotonation.

Authors:  Amitava Adhikary; Anil Kumar; Shawn A Munafo; Deepti Khanduri; Michael D Sevilla
Journal:  Phys Chem Chem Phys       Date:  2010       Impact factor: 3.676

4.  Formation of S-Cl phosphorothioate adduct radicals in dsDNA S-oligomers: hole transfer to guanine vs disulfide anion radical formation.

Authors:  Amitava Adhikary; Anil Kumar; Brian J Palmer; Andrew D Todd; Michael D Sevilla
Journal:  J Am Chem Soc       Date:  2013-08-14       Impact factor: 15.419

5.  Hydroxyl ion addition to one-electron oxidized thymine: unimolecular interconversion of C5 to C6 OH-adducts.

Authors:  Amitava Adhikary; Anil Kumar; Alicia N Heizer; Brian J Palmer; Venkata Pottiboyina; Yong Liang; Stanislaw F Wnuk; Michael D Sevilla
Journal:  J Am Chem Soc       Date:  2013-02-14       Impact factor: 15.419

6.  Formation of aminyl radicals on electron attachment to AZT: abstraction from the sugar phosphate backbone versus one-electron oxidation of guanine.

Authors:  Amitava Adhikary; Deepti Khanduri; Venkata Pottiboyina; Cory T Rice; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2010-07-22       Impact factor: 2.991

7.  Performance of DFT methods in the calculation of isotropic and dipolar contributions to 14N hyperfine coupling constants of nitroxide radicals.

Authors:  Oleg I Gromov; Sergei V Kuzin; Elena N Golubeva
Journal:  J Mol Model       Date:  2019-03-11       Impact factor: 1.810

8.  Direct formation of the C5'-radical in the sugar-phosphate backbone of DNA by high-energy radiation.

Authors:  Amitava Adhikary; David Becker; Brian J Palmer; Alicia N Heizer; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2012-05-14       Impact factor: 2.991

9.  Photoexcitation of adenine cation radical [A*+] in the near UV-vis region produces sugar radicals in adenosine and in its nucleotides.

Authors:  Amitava Adhikary; Deepti Khanduri; Anil Kumar; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2008-12-11       Impact factor: 2.991

10.  Probing interactions from solvent-exchangeable protons and monovalent cations with the 1,2-propanediol-1-yl radical intermediate in the reaction of dioldehydrase.

Authors:  Phillip A Schwartz; Russell Lobrutto; George H Reed; Perry A Frey
Journal:  Protein Sci       Date:  2007-06       Impact factor: 6.725

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