Literature DB >> 17525464

Probing interactions from solvent-exchangeable protons and monovalent cations with the 1,2-propanediol-1-yl radical intermediate in the reaction of dioldehydrase.

Phillip A Schwartz1, Russell Lobrutto, George H Reed, Perry A Frey.   

Abstract

The reaction of adenosylcobalamin-dependent dioldehydrase with 1,2-propanediol gives rise to a radical intermediate observable by EPR spectroscopy. This reaction requires a monovalent cation such as potassium ion. The radical signal arises from the formation of a radical pair comprised of the Co(II) of cob(II)alamin and a substrate-related radical generated upon hydrogen abstraction by the 5'-deoxyadenosyl radical. The high-field asymmetric doublet arising from the organic radical has allowed investigation of its composition and environment through the use of EPR spectroscopic techniques. To characterize the protonation state of the oxygen substituents in the radical intermediate, X-band EPR spectroscopy was performed in the presence of D(2)O and compared to the spectrum in H(2)O. Results indicate that the unpaired electron of the steady-state radical couples to a proton on the C(1) hydroxyl group. Other spectroscopic experiments were performed, using either potassium or thallous ion as the activating monovalent cation, in an attempt to exploit the magnetic nature of the (205,203)Tl nucleus to identify any intimate interaction of the radical intermediate with the activating cation. The radical intermediate in complex with dioldehydrase, cob(II)alamin and one of the activating monovalent cations was observed using EPR, ENDOR, and ESEEM spectroscopy. The spectroscopic evidence did not implicate a direct coordination of the activating cation and the substrate derived radical intermediate.

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Year:  2007        PMID: 17525464      PMCID: PMC2206673          DOI: 10.1110/ps.072768007

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  24 in total

1.  Direct participation of potassium ion in the catalysis of coenzyme B(12)-dependent diol dehydratase.

Authors:  T Toraya; K Yoshizawa; M Eda; T Yamabe
Journal:  J Biochem       Date:  1999-10       Impact factor: 3.387

2.  Identification of cis-ethanesemidione as the organic radical derived from glycolaldehyde in the suicide inactivation of dioldehydrase and of ethanolamine ammonia-lyase.

Authors:  A Abend; V Bandarian; G H Reed; P A Frey
Journal:  Biochemistry       Date:  2000-05-23       Impact factor: 3.162

Review 3.  Radical catalysis of B12 enzymes: structure, mechanism, inactivation, and reactivation of diol and glycerol dehydratases.

Authors:  T Toraya
Journal:  Cell Mol Life Sci       Date:  2000-01-20       Impact factor: 9.261

4.  Energetic feasibility of hydrogen abstraction and recombination in coenzyme B(12)-dependent diol dehydratase reaction.

Authors:  T Toraya; M Eda; T Kamachi; K Yoshizawa
Journal:  J Biochem       Date:  2001-12       Impact factor: 3.387

5.  Understanding the mechanism of B(12)-dependent diol dehydratase: a synergistic retro-push--pull proposal.

Authors:  D M Smith; B T Golding; L Radom
Journal:  J Am Chem Soc       Date:  2001-02-28       Impact factor: 15.419

6.  Purification and properties of dioldehydrase, and enzyme requiring a cobamide coenzyme.

Authors:  H A LEE; R H ABELES
Journal:  J Biol Chem       Date:  1963-07       Impact factor: 5.157

7.  Interactions of diol dehydrase and 3',4'-anhydroadenosylcobalamin: suicide inactivation by electron transfer.

Authors:  Olafur Th Magnusson; Perry A Frey
Journal:  Biochemistry       Date:  2002-02-05       Impact factor: 3.162

8.  Catalytic roles of active-site amino acid residues of coenzyme B12-dependent diol dehydratase: protonation state of histidine and pull effect of glutamate.

Authors:  Takashi Kamachi; Tetsuo Toraya; Kazunari Yoshizawa
Journal:  J Am Chem Soc       Date:  2004-12-15       Impact factor: 15.419

9.  A new mode of B12 binding and the direct participation of a potassium ion in enzyme catalysis: X-ray structure of diol dehydratase.

Authors:  N Shibata; J Masuda; T Tobimatsu; T Toraya; K Suto; Y Morimoto; N Yasuoka
Journal:  Structure       Date:  1999-08-15       Impact factor: 5.006

10.  Suicide inactivation of dioldehydratase by glycolaldehyde and chloroacetaldehyde: an examination of the reaction mechanism.

Authors:  Gregory M Sandala; David M Smith; Michelle L Coote; Leo Radom
Journal:  J Am Chem Soc       Date:  2004-10-06       Impact factor: 15.419

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  3 in total

1.  Cobalamin- and corrinoid-dependent enzymes.

Authors:  Rowena G Matthews
Journal:  Met Ions Life Sci       Date:  2009-01-30

2.  Dioldehydrase: an essential role for potassium ion in the homolytic cleavage of the cobalt-carbon bond in adenosylcobalamin.

Authors:  Phillip A Schwartz; Perry A Frey
Journal:  Biochemistry       Date:  2007-05-22       Impact factor: 3.162

3.  Monovalent Cation Activation of the Radical SAM Enzyme Pyruvate Formate-Lyase Activating Enzyme.

Authors:  Krista A Shisler; Rachel U Hutcheson; Masaki Horitani; Kaitlin S Duschene; Adam V Crain; Amanda S Byer; Eric M Shepard; Ashley Rasmussen; Jian Yang; William E Broderick; Jessica L Vey; Catherine L Drennan; Brian M Hoffman; Joan B Broderick
Journal:  J Am Chem Soc       Date:  2017-08-22       Impact factor: 15.419

  3 in total

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