Literature DB >> 16831009

Anionic polyelectrolyte adsorption on mica mediated by multivalent cations: a solution to DNA imaging by atomic force microscopy under high ionic strengths.

David Pastré1, Loïc Hamon, Fabrice Landousy, Isabelle Sorel, Marie-Odile David, Alain Zozime, Eric Le Cam, Olivier Piétrement.   

Abstract

Adsorption of DNA molecules on mica, a highly negatively charged surface, mediated by divalent or trivalent cations is considered. By analyzing atomic force microscope (AFM) images of DNA molecules adsorbed on mica, phase diagrams of DNA molecules interacting with a mica surface are established in terms of concentrations of monovalent salt (NaCl) and divalent (MgCl2) or multivalent (spermidine, cobalt hexamine) salts. These diagrams show two transitions between nonadsorption and adsorption. The first one arises when the concentration of multivalent counterions is larger than a limit value, which is not sensitive to the monovalent salt concentration. The second transition is due to the binding competition between monovalent and multivalent counterions. In addition, we develop a model of polyelectrolyte adsorption on like-charged surfaces with multivalent counterions. This model shows that the correlations of the multivalent counterions at the interface between DNA and mica play a critical role. Furthermore, it appears that DNA adsorption takes place when the energy gain in counterion correlations overcomes an energy barrier. This barrier is induced by the entropy loss in confining DNA in a thin adsorbed layer, the entropy loss in the interpenetration of the clouds of mica and DNA counterions, and the electrostatic repulsion between DNA and mica. The analysis of the experimental results provides an estimation of this energy barrier. We then discuss some important issues, including DNA adsorption under physiological conditions.

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Year:  2006        PMID: 16831009     DOI: 10.1021/la053387y

Source DB:  PubMed          Journal:  Langmuir        ISSN: 0743-7463            Impact factor:   3.882


  19 in total

1.  Preparation of Mica and Silicon Substrates for DNA Origami Analysis and Experimentation.

Authors:  Michelle A Pillers; Rebecca Shute; Adam Farchone; Keenan P Linder; Rose Doerfler; Corey Gavin; Valerie Goss; Marya Lieberman
Journal:  J Vis Exp       Date:  2015-07-23       Impact factor: 1.355

2.  Localized nanoscopic surface measurements of nickel-modified mica for single-molecule DNA sequence sampling.

Authors:  Carlin Hsueh; Haijian Chen; James K Gimzewski; Jason Reed; Tarek M Abdel-Fattah
Journal:  ACS Appl Mater Interfaces       Date:  2010-10-29       Impact factor: 9.229

3.  Multiphasic DNA adsorption to silica surfaces under varying buffer, pH, and ionic strength conditions.

Authors:  Peter E Vandeventer; Jessica S Lin; Theodore J Zwang; Ali Nadim; Malkiat S Johal; Angelika Niemz
Journal:  J Phys Chem B       Date:  2012-05-08       Impact factor: 2.991

4.  Nucleic Acid Binding by Mason-Pfizer Monkey Virus CA Promotes Virus Assembly and Genome Packaging.

Authors:  Tibor Füzik; Růžena Píchalová; Florian K M Schur; Karolína Strohalmová; Ivana Křížová; Romana Hadravová; Michaela Rumlová; John A G Briggs; Pavel Ulbrich; Tomáš Ruml
Journal:  J Virol       Date:  2016-04-14       Impact factor: 5.103

5.  Placement and orientation of individual DNA shapes on lithographically patterned surfaces.

Authors:  Ryan J Kershner; Luisa D Bozano; Christine M Micheel; Albert M Hung; Ann R Fornof; Jennifer N Cha; Charles T Rettner; Marco Bersani; Jane Frommer; Paul W K Rothemund; Gregory M Wallraff
Journal:  Nat Nanotechnol       Date:  2009-08-16       Impact factor: 39.213

6.  DNA release dynamics from reducible polyplexes by atomic force microscopy.

Authors:  Lei Wan; Devika S Manickam; David Oupický; Guangzhao Mao
Journal:  Langmuir       Date:  2008-10-08       Impact factor: 3.882

7.  Single molecule detection of PARP1 and PARP2 interaction with DNA strand breaks and their poly(ADP-ribosyl)ation using high-resolution AFM imaging.

Authors:  Maria V Sukhanova; Sanae Abrakhi; Vandana Joshi; David Pastre; Mikhail M Kutuzov; Rashid O Anarbaev; Patrick A Curmi; Loic Hamon; Olga I Lavrik
Journal:  Nucleic Acids Res       Date:  2015-12-15       Impact factor: 16.971

8.  Rad51 polymerization reveals a new chromatin remodeling mechanism.

Authors:  Pauline Dupaigne; Christophe Lavelle; Anthony Justome; Sophie Lafosse; Gilles Mirambeau; Marc Lipinski; Olivier Piétrement; Eric Le Cam
Journal:  PLoS One       Date:  2008-11-04       Impact factor: 3.240

9.  High-resolution AFM imaging of single-stranded DNA-binding (SSB) protein--DNA complexes.

Authors:  Loïc Hamon; David Pastré; Pauline Dupaigne; Cyrille Le Breton; Eric Le Cam; Olivier Piétrement
Journal:  Nucleic Acids Res       Date:  2007-03-28       Impact factor: 16.971

10.  Polyamine sharing between tubulin dimers favours microtubule nucleation and elongation via facilitated diffusion.

Authors:  Alain Mechulam; Konstantin G Chernov; Elodie Mucher; Loic Hamon; Patrick A Curmi; David Pastré
Journal:  PLoS Comput Biol       Date:  2009-01-02       Impact factor: 4.475

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