Literature DB >> 16829349

European Cytogeneticists Association Register of Unbalanced Chromosome Aberrations (ECARUCA); an online database for rare chromosome abnormalities.

I Feenstra1, J Fang, D A Koolen, A Siezen, C Evans, R M Winter, M M Lees, M Riegel, B B A de Vries, C M A Van Ravenswaaij, A Schinzel.   

Abstract

During recent years a considerable improvement in diagnostic techniques has enabled cytogeneticists to find more and smaller chromosomal aberrations. However, accurate clinical knowledge about rare chromosome disorders is frequently lacking, mostly due to a significant decline in publishable cases. On the other hand, there is an increasing demand from parents and physicians for reliable information. In order to improve the quality and the quantity of data available, we designed a new database named the European Cytogeneticists Association Register of Unbalanced Chromosome Aberrations (ECARUCA) at http://www.ecaruca.net. This Internet-database contains cytogenetic and clinical data of patients with rare chromosome abnormalities, including microscopically visible aberrations, as well as microdeletions and -duplications. Cases with certain breakpoints collected in the Zurich Cytogenetic Database were transferred to ECARUCA. The advantages of ECARUCA compared to existing sources are that ECARUCA is interactive, dynamic and has long-term possibilities to store cytogenetic, molecular and clinical data. Professionals can login to submit new cases and perform searches in the database through the Internet. Currently the database contains 1500 unique chromosomal aberrations from almost 4000 patients. A frequent submission of new data ensures the up-to-date quality of the collection. Individual parent accounts allow parents to inform the ECARUCA team about the follow-up of their child. The ECARUCA database provides health care workers with accurate information on clinical aspects of rare chromosome disorders. Additionally, detailed correlations between chromosome aberrations and their phenotypes are of invaluable help in localising genes for mental retardation and congenital anomalies.

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Year:  2005        PMID: 16829349     DOI: 10.1016/j.ejmg.2005.10.131

Source DB:  PubMed          Journal:  Eur J Med Genet        ISSN: 1769-7212            Impact factor:   2.708


  21 in total

1.  Partial deletion of GLRB and GRIA2 in a patient with intellectual disability.

Authors:  Karl Hackmann; Sarah Matko; Eva-Maria Gerlach; Maja von der Hagen; Barbara Klink; Evelin Schrock; Andreas Rump; Nataliya Di Donato
Journal:  Eur J Hum Genet       Date:  2012-06-06       Impact factor: 4.246

2.  Phenotypic information in genomic variant databases enhances clinical care and research: the International Standards for Cytogenomic Arrays Consortium experience.

Authors:  Erin Rooney Riggs; Laird Jackson; David T Miller; Steven Van Vooren
Journal:  Hum Mutat       Date:  2012-03-20       Impact factor: 4.878

3.  The causality of de novo copy number variants is overestimated.

Authors:  Joris R Vermeesch; Irina Balikova; Connie Schrander-Stumpel; Jean-Pierre Fryns; Koenraad Devriendt
Journal:  Eur J Hum Genet       Date:  2011-05-18       Impact factor: 4.246

Review 4.  Chromosomal abnormality, laboratory techniques, tools and databases in molecular Cytogenetics.

Authors:  Abbasali Emamjomeh; Behzad Hajieghrari; Somayeh Montazerinezhad
Journal:  Mol Biol Rep       Date:  2020-10-26       Impact factor: 2.316

5.  A study of normal copy number variations in Israeli population.

Authors:  Idit Maya; Pola Smirin-Yosef; Sarit Kahana; Sne Morag; Shiri Yacobson; Ifaat Agmon-Fishman; Reut Matar; Elisheva Bitton; Mordechai Shohat; Lina Basel-Salmon; Mali Salmon-Divon
Journal:  Hum Genet       Date:  2020-09-27       Impact factor: 4.132

6.  A 380-kb Duplication in 7p22.3 Encompassing the LFNG Gene in a Boy with Asperger Syndrome.

Authors:  A T Vulto-van Silfhout; A F M de Brouwer; N de Leeuw; C C Obihara; H G Brunner; B B A de Vries
Journal:  Mol Syndromol       Date:  2012-02-10

7.  Diagnostic interpretation of array data using public databases and internet sources.

Authors:  Nicole de Leeuw; Trijnie Dijkhuizen; Jayne Y Hehir-Kwa; Nigel P Carter; Lars Feuk; Helen V Firth; Robert M Kuhn; David H Ledbetter; Christa Lese Martin; Conny M A van Ravenswaaij-Arts; Steven W Scherer; Soheil Shams; Steven Van Vooren; Rolf Sijmons; Morris Swertz; Ros Hastings
Journal:  Hum Mutat       Date:  2012-06       Impact factor: 4.878

8.  A recurrent 16p12.1 microdeletion supports a two-hit model for severe developmental delay.

Authors:  Santhosh Girirajan; Jill A Rosenfeld; Gregory M Cooper; Francesca Antonacci; Priscillia Siswara; Andy Itsara; Laura Vives; Tom Walsh; Shane E McCarthy; Carl Baker; Heather C Mefford; Jeffrey M Kidd; Sharon R Browning; Brian L Browning; Diane E Dickel; Deborah L Levy; Blake C Ballif; Kathryn Platky; Darren M Farber; Gordon C Gowans; Jessica J Wetherbee; Alexander Asamoah; David D Weaver; Paul R Mark; Jennifer Dickerson; Bhuwan P Garg; Sara A Ellingwood; Rosemarie Smith; Valerie C Banks; Wendy Smith; Marie T McDonald; Joe J Hoo; Beatrice N French; Cindy Hudson; John P Johnson; Jillian R Ozmore; John B Moeschler; Urvashi Surti; Luis F Escobar; Dima El-Khechen; Jerome L Gorski; Jennifer Kussmann; Bonnie Salbert; Yves Lacassie; Alisha Biser; Donna M McDonald-McGinn; Elaine H Zackai; Matthew A Deardorff; Tamim H Shaikh; Eric Haan; Kathryn L Friend; Marco Fichera; Corrado Romano; Jozef Gécz; Lynn E DeLisi; Jonathan Sebat; Mary-Claire King; Lisa G Shaffer; Evan E Eichler
Journal:  Nat Genet       Date:  2010-02-14       Impact factor: 38.330

Review 9.  DECIPHER: web-based, community resource for clinical interpretation of rare variants in developmental disorders.

Authors:  Ganesh J Swaminathan; Eugene Bragin; Eleni A Chatzimichali; Manuel Corpas; A Paul Bevan; Caroline F Wright; Nigel P Carter; Matthew E Hurles; Helen V Firth
Journal:  Hum Mol Genet       Date:  2012-09-08       Impact factor: 6.150

Review 10.  Mechanisms of Origin, Phenotypic Effects and Diagnostic Implications of Complex Chromosome Rearrangements.

Authors:  Martin Poot; Thomas Haaf
Journal:  Mol Syndromol       Date:  2015-08-15
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