Literature DB >> 16825511

Technical validation of a TM Biosciences Luminex-based multiplex assay for detecting the American College of Medical Genetics recommended cystic fibrosis mutation panel.

Charles M Strom1, Richard Janeszco, Franklin Quan, Sheng-biao Wang, Arlene Buller, Matthew McGinniss, Weimin Sun.   

Abstract

The American College of Medical Genetics (ACMG) and the American College of Obstetrics and Gynecology have recommended population-based carrier screening for cystic fibrosis to include 23 mutations and 5 polymorphisms in the cystic fibrosis transmembrane regulator gene(CFTR). We estimate 20% of all pregnant women are being tested for their CF carrier status. We assessed two commercially available analyte-specific reagents (ASRs) capable of testing all 25 mutations of the original ACMG-recommended panel, Tag-It CFTR40 + 4 Luminex-based reagent from Tm Biosciences, and our current assay platform, CF Genotyper V. 3.0 from Abbott/Celera. Blinded testing using genomic controls containing known CFTRmutations demonstrated that the Tag-It platform detected all mutations on the ACMG-recommended panel. We next performed a platform comparison with 1,029 consecutive patient samples. There were no discrepant results in 1,029 consecutive analyses between the two platforms, yielding an impressive figure of >25,000 individual genotypes without error for both platforms. In conclusion, both the Abbott/Celera ASR reagent and the Luminex-based Tag-It CF ASR reagent are appropriate for use in the clinical laboratory.

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Year:  2006        PMID: 16825511      PMCID: PMC1867610          DOI: 10.2353/jmoldx.2006.050115

Source DB:  PubMed          Journal:  J Mol Diagn        ISSN: 1525-1578            Impact factor:   5.568


  11 in total

1.  Direct visualization of cystic fibrosis transmembrane regulator mutations in the clinical laboratory setting.

Authors:  Charles M Strom; David D Clark; Feras M Hantash; Larry Rea; Ben Anderson; Diana Maul; Donghui Huang; Donald Traul; Christina Chen Tubman; Renee Garcia; P Patrick Hess; Hong Wang; Beryl Crossley; Evelyn Woodruff; Rebecca Chen; Myra Killeen; Weimin Sun; Jonathan Beer; Heather Avens; Barry Polisky; Robert D Jenison
Journal:  Clin Chem       Date:  2004-03-09       Impact factor: 8.327

Review 2.  Mutation detection, interpretation, and applications in the clinical laboratory setting.

Authors:  Charles M Strom
Journal:  Mutat Res       Date:  2005-06-03       Impact factor: 2.433

3.  Molecular screening for diseases frequent in Ashkenazi Jews: lessons learned from more than 100,000 tests performed in a commercial laboratory.

Authors:  Charles M Strom; Beryl Crossley; Joy B Redman; Franklin Quan; Arlene Buller; Matthew J McGinniss; Weimin Sun
Journal:  Genet Med       Date:  2004 May-Jun       Impact factor: 8.822

4.  Updated assessment of cystic fibrosis mutation frequencies in non-Hispanic Caucasians.

Authors:  Glenn E Palomaki; James E Haddow; Linda A Bradley; Stacey C FitzSimmons
Journal:  Genet Med       Date:  2002 Mar-Apr       Impact factor: 8.822

5.  Cystic fibrosis carrier screening: issues in implementation.

Authors:  Michael S Watson; Robert J Desnick; Wayne W Grody; Michael T Mennuti; Bradley W Popovich; C Sue Richards
Journal:  Genet Med       Date:  2002 Nov-Dec       Impact factor: 8.822

6.  Cystic fibrosis screening using the College panel: platform comparison and lessons learned from the first 20,000 samples.

Authors:  Charles M Strom; Donghui Huang; Arlene Buller; Joy Redman; Beryl Crossley; Ben Anderson; Tom Entwistle; Weimin Sun
Journal:  Genet Med       Date:  2002 Jul-Aug       Impact factor: 8.822

7.  Laboratory standards and guidelines for population-based cystic fibrosis carrier screening.

Authors:  W W Grody; G R Cutting; K W Klinger; C S Richards; M S Watson; R J Desnick
Journal:  Genet Med       Date:  2001 Mar-Apr       Impact factor: 8.822

8.  Technical validation of a multiplex platform to detect thirty mutations in eight genetic diseases prevalent in individuals of Ashkenazi Jewish descent.

Authors:  Charles M Strom; Richard A Janeczko; Ben Anderson; Joy Redman; Franklin Quan; Arlene Buller; Matthew J McGinniss; Wei Min Sun
Journal:  Genet Med       Date:  2005 Nov-Dec       Impact factor: 8.822

9.  Cystic fibrosis population carrier screening: 2004 revision of American College of Medical Genetics mutation panel.

Authors:  Michael S Watson; Garry R Cutting; Robert J Desnick; Deborah A Driscoll; Katherine Klinger; Michael Mennuti; Glenn E Palomaki; Bradley W Popovich; Victoria M Pratt; Elizabeth M Rohlfs; Charles M Strom; C Sue Richards; David R Witt; Wayne W Grody
Journal:  Genet Med       Date:  2004 Sep-Oct       Impact factor: 8.822

10.  The I148T CFTR allele occurs on multiple haplotypes: a complex allele is associated with cystic fibrosis.

Authors:  Elizabeth M Rohlfs; Zhaoqing Zhou; Elaine A Sugarman; Ruth A Heim; Rhonda G Pace; Michael R Knowles; Lawrence M Silverman; Bernice A Allitto
Journal:  Genet Med       Date:  2002 Sep-Oct       Impact factor: 8.822

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  7 in total

1.  Development of genomic reference materials for cystic fibrosis genetic testing.

Authors:  Victoria M Pratt; Michele Caggana; Christina Bridges; Arlene M Buller; Lisa DiAntonio; W Edward Highsmith; Leonard M Holtegaard; Kasinathan Muralidharan; Elizabeth M Rohlfs; Jack Tarleton; Lorraine Toji; Shannon D Barker; Lisa V Kalman
Journal:  J Mol Diagn       Date:  2009-04-09       Impact factor: 5.568

2.  Experience with carrier screening and prenatal diagnosis for 16 Ashkenazi Jewish genetic diseases.

Authors:  Stuart A Scott; Lisa Edelmann; Liu Liu; Minjie Luo; Robert J Desnick; Ruth Kornreich
Journal:  Hum Mutat       Date:  2010-11       Impact factor: 4.878

3.  Cystic fibrosis transmembrane conductance regulator (CFTR) gene mutations and risk for pancreatic adenocarcinoma.

Authors:  Robert R McWilliams; Gloria M Petersen; Kari G Rabe; Leonard M Holtegaard; Pamela J Lynch; Michele D Bishop; W Edward Highsmith
Journal:  Cancer       Date:  2010-01-01       Impact factor: 6.860

4.  Impact of compounding error on strategies for subtyping pathogenic bacteria.

Authors:  Douglas R Call; Lisa Orfe; Margaret A Davis; Stacey Lafrentz; Min-Su Kang
Journal:  Foodborne Pathog Dis       Date:  2008-08       Impact factor: 3.171

5.  A novel hepatitis C virus genotyping method based on liquid microarray.

Authors:  Cesar A B Duarte; Leonardo Foti; Sueli M Nakatani; Irina N Riediger; Celina O Poersch; Daniela P Pavoni; Marco A Krieger
Journal:  PLoS One       Date:  2010-09-20       Impact factor: 3.240

6.  ALG: automated genotype calling of Luminex assays.

Authors:  Mathieu Bourgey; Mathieu Lariviere; Chantal Richer; Daniel Sinnett
Journal:  PLoS One       Date:  2011-05-06       Impact factor: 3.240

7.  Multiple cytokines are released when blood from patients with tuberculosis is stimulated with Mycobacterium tuberculosis antigens.

Authors:  Kathryn L Kellar; Jennifer Gehrke; Stephen E Weis; Aida Mahmutovic-Mayhew; Blachy Davila; Margan J Zajdowicz; Robin Scarborough; Philip A LoBue; Alfred A Lardizabal; Charles L Daley; Randall R Reves; John Bernardo; Brandon H Campbell; William C Whitworth; Gerald H Mazurek
Journal:  PLoS One       Date:  2011-11-21       Impact factor: 3.240

  7 in total

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