Literature DB >> 16819829

Specific hydrogen-bonding networks responsible for selective O2 sensing of the oxygen sensor protein HemAT from Bacillus subtilis.

Hideaki Yoshimura1, Shiro Yoshioka, Katsuaki Kobayashi, Takehiro Ohta, Takeshi Uchida, Minoru Kubo, Teizo Kitagawa, Shigetoshi Aono.   

Abstract

HemAT from Bacillus subtilis (HemAT-Bs) is a heme-based O2 sensor protein that acts as a signal transducer responsible for aerotaxis. HemAT-Bs discriminates its physiological effector, O2, from other gas molecules to generate the aerotactic signal, but the detailed mechanism of the selective O2 sensing is not obvious. In this study, we measured electronic absorption, electron paramagnetic resonance (EPR), and resonance Raman spectra of HemAT-Bs to elucidate the mechanism of selective O2 sensing by HemAT-Bs. Resonance Raman spectroscopy revealed the presence of a hydrogen bond between His86 and the heme propionate only in the O2-bound form, in addition to that between Thr95 and the heme-bound O2. The disruption of this hydrogen bond by the mutation of His86 caused the disappearance of a conformer with a direct hydrogen bond between Thr95 and the heme-bound O2 that is present in WT HemAT-Bs. On the basis of these results, we propose a model for selective O2 sensing by HemAT-Bs as follows. The formation of the hydrogen bond between His86 and the heme propionate induces a conformational change of the CE-loop and the E-helix by which Thr95 is located at the proper position to form the hydrogen bond with the heme-bound O2. This stepwise conformational change would be essential to selective O2 sensing and signal transduction by HemAT-Bs.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16819829     DOI: 10.1021/bi060315c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  11 in total

Review 1.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

2.  Protein Dynamics of the Sensor Protein HemAT as Probed by Time-Resolved Step-Scan FTIR Spectroscopy.

Authors:  Andrea Pavlou; Hideaki Yoshimura; Shigetoshi Aono; Eftychia Pinakoulaki
Journal:  Biophys J       Date:  2018-02-06       Impact factor: 4.033

Review 3.  A role of heme side-chains of human hemoglobin in its function revealed by circular dichroism and resonance Raman spectroscopy.

Authors:  Masako Nagai; Naoki Mizusawa; Teizo Kitagawa; Shigenori Nagatomo
Journal:  Biophys Rev       Date:  2017-12-19

4.  Human P450 CYP17A1: Control of Substrate Preference by Asparagine 202.

Authors:  Michael C Gregory; Piotr J Mak; Yogan Khatri; James R Kincaid; Stephen G Sligar
Journal:  Biochemistry       Date:  2018-01-24       Impact factor: 3.162

5.  Vibrational coherence spectroscopy of the heme domain in the CO-sensing transcriptional activator CooA.

Authors:  Venugopal Karunakaran; Abdelkrim Benabbas; Hwan Youn; Paul M Champion
Journal:  J Am Chem Soc       Date:  2011-10-28       Impact factor: 15.419

6.  Two ligand-binding sites in the O2-sensing signal transducer HemAT: implications for ligand recognition/discrimination and signaling.

Authors:  Eftychia Pinakoulaki; Hideaki Yoshimura; Vangelis Daskalakis; Shiro Yoshioka; Shigetoshi Aono; Constantinos Varotsis
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-26       Impact factor: 11.205

7.  Site-specific protein dynamics in communication pathway from sensor to signaling domain of oxygen sensor protein, HemAT-Bs: Time-resolved Ultraviolet Resonance Raman Study.

Authors:  Samir F El-Mashtoly; Minoru Kubo; Yuzong Gu; Hitomi Sawai; Satoru Nakashima; Takashi Ogura; Shigetoshi Aono; Teizo Kitagawa
Journal:  J Biol Chem       Date:  2012-04-23       Impact factor: 5.157

8.  Human Cytochrome CYP17A1: The Structural Basis for Compromised Lyase Activity with 17-Hydroxyprogesterone.

Authors:  Piotr J Mak; Ruchia Duggal; Ilia G Denisov; Michael C Gregory; Stephen G Sligar; James R Kincaid
Journal:  J Am Chem Soc       Date:  2018-06-05       Impact factor: 15.419

Review 9.  Heme-based globin-coupled oxygen sensors: linking oxygen binding to functional regulation of diguanylate cyclase, histidine kinase, and methyl-accepting chemotaxis.

Authors:  Markéta Martínková; Kenichi Kitanishi; Toru Shimizu
Journal:  J Biol Chem       Date:  2013-08-08       Impact factor: 5.157

Review 10.  Mechanism and Role of Globin-Coupled Sensor Signalling.

Authors:  Johnnie A Walker; Shannon Rivera; Emily E Weinert
Journal:  Adv Microb Physiol       Date:  2017-07-06       Impact factor: 3.517

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.