Literature DB >> 16808986

Genomic insights into positive selection.

Shameek Biswas1, Joshua M Akey.   

Abstract

The traditional way of identifying targets of adaptive evolution has been to study a few loci that one hypothesizes a priori to have been under selection. This approach is complicated because of the confounding effects that population demographic history and selection have on patterns of DNA sequence variation. In principle, multilocus analyses can facilitate robust inferences of selection at individual loci. The deluge of large-scale catalogs of genetic variation has stimulated many genome-wide scans for positive selection in several species. Here, we review some of the salient observations of these studies, identify important challenges ahead, consider the limitations of genome-wide scans for selection and discuss the potential significance of a comprehensive understanding of genomic patterns of selection for disease-related research.

Mesh:

Year:  2006        PMID: 16808986     DOI: 10.1016/j.tig.2006.06.005

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  175 in total

1.  The coalescent with selection on copy number variants.

Authors:  Kosuke M Teshima; Hideki Innan
Journal:  Genetics       Date:  2011-12-14       Impact factor: 4.562

2.  Distinguishing positive selection from neutral evolution: boosting the performance of summary statistics.

Authors:  Kao Lin; Haipeng Li; Christian Schlötterer; Andreas Futschik
Journal:  Genetics       Date:  2010-11-01       Impact factor: 4.562

Review 3.  Genome-based nutrition: an intervention strategy for the prevention and treatment of obesity and nonalcoholic steatohepatitis.

Authors:  Sonia Roman; Claudia Ojeda-Granados; Omar Ramos-Lopez; Arturo Panduro
Journal:  World J Gastroenterol       Date:  2015-03-28       Impact factor: 5.742

4.  A three-single-nucleotide polymorphism haplotype in intron 1 of OCA2 explains most human eye-color variation.

Authors:  David L Duffy; Grant W Montgomery; Wei Chen; Zhen Zhen Zhao; Lien Le; Michael R James; Nicholas K Hayward; Nicholas G Martin; Richard A Sturm
Journal:  Am J Hum Genet       Date:  2006-12-20       Impact factor: 11.025

Review 5.  Human population structure and the adaptive response to pathogen-induced selection pressures.

Authors:  John Novembre; Eunjung Han
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-03-19       Impact factor: 6.237

6.  Efficient approximate Bayesian computation coupled with Markov chain Monte Carlo without likelihood.

Authors:  Daniel Wegmann; Christoph Leuenberger; Laurent Excoffier
Journal:  Genetics       Date:  2009-06-08       Impact factor: 4.562

7.  Targeted resequencing of two genes, RAGE and POLL, confirms findings from a genome-wide scan for adaptive evolution and provides evidence for positive selection in additional populations.

Authors:  Joanna L Kelley; Kayley Turkheimer; Margo Haney; Willie J Swanson
Journal:  Hum Mol Genet       Date:  2008-12-05       Impact factor: 6.150

8.  Spatiotemporal dynamics of gene flow and hybrid fitness between the M and S forms of the malaria mosquito, Anopheles gambiae.

Authors:  Yoosook Lee; Clare D Marsden; Laura C Norris; Travis C Collier; Bradley J Main; Abdrahamane Fofana; Anthony J Cornel; Gregory C Lanzaro
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-18       Impact factor: 11.205

9.  Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes.

Authors:  Romain A Studer; Simon Penel; Laurent Duret; Marc Robinson-Rechavi
Journal:  Genome Res       Date:  2008-06-18       Impact factor: 9.043

10.  Positive selection within a diatom species acts on putative protein interactions and transcriptional regulation.

Authors:  Julie A Koester; Willie J Swanson; E Virginia Armbrust
Journal:  Mol Biol Evol       Date:  2012-10-23       Impact factor: 16.240

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