Literature DB >> 22312055

Human population structure and the adaptive response to pathogen-induced selection pressures.

John Novembre1, Eunjung Han.   

Abstract

The past few years of research in human evolutionary genetics have provided novel insights and questions regarding how human adaptations to recent selective pressures have taken place. Here, we review the advances most relevant to understanding human evolution in response to pathogen-induced selective pressures. Key insights come from theoretical models of adaptive evolution, particularly those that consider spatially structured populations, and from empirical population genomic studies of adaptive evolution in humans. We also review the CCR5-Δ32 HIV resistance allele as a case study of pathogen resistance in humans. Taken together, the results make clear that the human response to pathogen-induced selection pressures depends on a complex interplay between the age of the pathogen, the genetic basis of potential resistance phenotypes, and how population structure impacts the adaptive process in humans.

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Year:  2012        PMID: 22312055      PMCID: PMC3267119          DOI: 10.1098/rstb.2011.0305

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  69 in total

1.  Enhanced (hydrodynamic) transport induced by population growth in reaction-diffusion systems with application to population genetics.

Authors:  Marcel Ovidiu Vlad; L Luca Cavalli-Sforza; John Ross
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-01       Impact factor: 11.205

2.  Using environmental correlations to identify loci underlying local adaptation.

Authors:  Graham Coop; David Witonsky; Anna Di Rienzo; Jonathan K Pritchard
Journal:  Genetics       Date:  2010-06-01       Impact factor: 4.562

3.  Surfing during population expansions promotes genetic revolutions and structuration.

Authors:  Laurent Excoffier; Nicolas Ray
Journal:  Trends Ecol Evol       Date:  2008-05-24       Impact factor: 17.712

4.  Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

Authors:  F Tajima
Journal:  Genetics       Date:  1989-11       Impact factor: 4.562

5.  The hitch-hiking effect of a favourable gene.

Authors:  J M Smith; J Haigh
Journal:  Genet Res       Date:  1974-02       Impact factor: 1.588

Review 6.  Positive natural selection in the human lineage.

Authors:  P C Sabeti; S F Schaffner; B Fry; J Lohmueller; P Varilly; O Shamovsky; A Palma; T S Mikkelsen; D Altshuler; E S Lander
Journal:  Science       Date:  2006-06-16       Impact factor: 47.728

7.  Global distribution of the CCR5 gene 32-basepair deletion.

Authors:  J J Martinson; N H Chapman; D C Rees; Y T Liu; J B Clegg
Journal:  Nat Genet       Date:  1997-05       Impact factor: 38.330

8.  The fate of mutations surfing on the wave of a range expansion.

Authors:  Seraina Klopfstein; Mathias Currat; Laurent Excoffier
Journal:  Mol Biol Evol       Date:  2005-11-09       Impact factor: 16.240

9.  Genetic restriction of HIV-1 infection and progression to AIDS by a deletion allele of the CKR5 structural gene. Hemophilia Growth and Development Study, Multicenter AIDS Cohort Study, Multicenter Hemophilia Cohort Study, San Francisco City Cohort, ALIVE Study.

Authors:  M Dean; M Carrington; C Winkler; G A Huttley; M W Smith; R Allikmets; J J Goedert; S P Buchbinder; E Vittinghoff; E Gomperts; S Donfield; D Vlahov; R Kaslow; A Saah; C Rinaldo; R Detels; S J O'Brien
Journal:  Science       Date:  1996-09-27       Impact factor: 47.728

10.  The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation.

Authors:  Jonathan K Pritchard; Joseph K Pickrell; Graham Coop
Journal:  Curr Biol       Date:  2010-02-23       Impact factor: 10.834

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  16 in total

1.  Diverse approaches to analysing the history of human and pathogen evolution: how to tell the story of the past 70 000 years.

Authors:  D M Altmann; F Balloux; R J Boyton
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-03-19       Impact factor: 6.237

Review 2.  The contribution of natural selection to present-day susceptibility to chronic inflammatory and autoimmune disease.

Authors:  Jessica F Brinkworth; Luis B Barreiro
Journal:  Curr Opin Immunol       Date:  2014-10-22       Impact factor: 7.486

3.  Limited evidence for classic selective sweeps in African populations.

Authors:  Julie M Granka; Brenna M Henn; Christopher R Gignoux; Jeffrey M Kidd; Carlos D Bustamante; Marcus W Feldman
Journal:  Genetics       Date:  2012-09-07       Impact factor: 4.562

Review 4.  Demographic events and evolutionary forces shaping European genetic diversity.

Authors:  Krishna R Veeramah; John Novembre
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-07-24       Impact factor: 10.005

Review 5.  Population genomics of rapid adaptation by soft selective sweeps.

Authors:  Philipp W Messer; Dmitri A Petrov
Journal:  Trends Ecol Evol       Date:  2013-09-25       Impact factor: 17.712

6.  Variation in NAT2 acetylation phenotypes is associated with differences in food-producing subsistence modes and ecoregions in Africa.

Authors:  Eliška Podgorná; Issa Diallo; Christelle Vangenot; Alicia Sanchez-Mazas; Audrey Sabbagh; Viktor Černý; Estella S Poloni
Journal:  BMC Evol Biol       Date:  2015-12-01       Impact factor: 3.260

7.  Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection.

Authors:  PingHsun Hsieh; Krishna R Veeramah; Joseph Lachance; Sarah A Tishkoff; Jeffrey D Wall; Michael F Hammer; Ryan N Gutenkunst
Journal:  Genome Res       Date:  2016-02-17       Impact factor: 9.043

8.  The molecular pathways underlying host resistance and tolerance to pathogens.

Authors:  Elizabeth J Glass
Journal:  Front Genet       Date:  2012-12-14       Impact factor: 4.599

9.  Extensive Admixture and Selective Pressure Across the Sahel Belt.

Authors:  Petr Triska; Pedro Soares; Etienne Patin; Veronica Fernandes; Viktor Cerny; Luisa Pereira
Journal:  Genome Biol Evol       Date:  2015-11-26       Impact factor: 3.416

Review 10.  Of genes and microbes: solving the intricacies in host genomes.

Authors:  Jun Wang; Liang Chen; Na Zhao; Xizhan Xu; Yakun Xu; Baoli Zhu
Journal:  Protein Cell       Date:  2018-04-02       Impact factor: 14.870

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