Literature DB >> 16802064

A novel RBF neural network training methodology to predict toxicity to Vibrio fischeri.

Georgia Melagraki1, Antreas Afantitis, Haralambos Sarimveis, Olga Igglessi-Markopoulou, Alex Alexandridis.   

Abstract

This work introduces a neural network methodology for developing QSTR predictors of toxicity to Vibrio fischeri. The method adopts the Radial Basis Function (RBF) architecture and the fuzzy means training strategy, which is fast and repetitive, in contrast to most traditional training techniques. The data set that was utilized consisted of 39 organic compounds and their corresponding toxicity values to Vibrio fischeri, while lipophilicity, equalized electronegativity and one topological index were used to provide input information to the models. The performance and predictive ability of the RBF model were illustrated through external validation and various statistical tests. The proposed methodology can be used to successfully model toxicity to Vibrio fischeri for a heterogeneous set of compounds.

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Year:  2006        PMID: 16802064     DOI: 10.1007/s11030-005-9008-y

Source DB:  PubMed          Journal:  Mol Divers        ISSN: 1381-1991            Impact factor:   2.943


  16 in total

1.  Study on quantitative structure-toxicity relationships of benzene derivatives acting by narcosis.

Authors:  Padmakar V Khadikar; Keshav C Mather; Shalini Singh; Anjani Phadnis; Anjali Shrivastava; Manorama Mandaloi
Journal:  Bioorg Med Chem       Date:  2002-06       Impact factor: 3.641

2.  Predictive QSAR modeling based on diversity sampling of experimental datasets for the training and test set selection.

Authors:  Alexander Golbraikh; Alexander Tropsha
Journal:  Mol Divers       Date:  2002       Impact factor: 2.943

3.  QSAR study on narcotic mechanism of action and toxicity: a molecular connectivity approach to Vibrio fischeri toxicity testing.

Authors:  Vijay K Agrawal; Padmakar V Khadikar
Journal:  Bioorg Med Chem       Date:  2002-11       Impact factor: 3.641

4.  Partial least squares modelling of the acute toxicity of aliphatic compounds to Tetrahymena pyriformis.

Authors:  T I Netzeva; T W Schultz; A O Aptula; M T D Cronin
Journal:  SAR QSAR Environ Res       Date:  2003-08       Impact factor: 3.000

5.  Chemical mixture toxicity testing with Vibrio fischeri: combined effects of binary mixtures for ten soft electrophiles.

Authors:  Douglas A Dawson; Gerald Pöch; T Wayne Schultz
Journal:  Ecotoxicol Environ Saf       Date:  2005-08-31       Impact factor: 6.291

6.  A novel simple QSAR model for the prediction of anti-HIV activity using multiple linear regression analysis.

Authors:  Antreas Afantitis; Georgia Melagraki; Haralambos Sarimveis; Panayiotis A Koutentis; John Markopoulos; Olga Igglessi-Markopoulou
Journal:  Mol Divers       Date:  2006-08-01       Impact factor: 2.943

7.  QSAR study on para-substituted aromatic sulfonamides as carbonic anhydrase II inhibitors using topological information indices.

Authors:  Georgia Melagraki; Antreas Afantitis; Haralambos Sarimveis; Olga Igglessi-Markopoulou; Claudiu T Supuran
Journal:  Bioorg Med Chem       Date:  2005-10-05       Impact factor: 3.641

8.  Structure-toxicity relationships for three mechanisms of action of toxicity to Vibrio fischeri.

Authors:  M T Cronin; T W Schultz
Journal:  Ecotoxicol Environ Saf       Date:  1998-01       Impact factor: 6.291

9.  QSTR with extended topochemical atom indices. Part 5: Modeling of the acute toxicity of phenylsulfonyl carboxylates to Vibrio fischeri using genetic function approximation.

Authors:  Kunal Roy; Gopinath Ghosh
Journal:  Bioorg Med Chem       Date:  2005-02-15       Impact factor: 3.641

10.  A QSAR study of the toxicity of amines to the fathead minnow.

Authors:  L D Newsome; D E Johnson; R L Lipnick; S J Broderius; C L Russom
Journal:  Sci Total Environ       Date:  1991-12       Impact factor: 7.963

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  5 in total

1.  QSAR-modeling of toxicity of organometallic compounds by means of the balance of correlations for InChI-based optimal descriptors.

Authors:  A A Toropov; A P Toropova; E Benfenati
Journal:  Mol Divers       Date:  2009-05-19       Impact factor: 2.943

2.  A combined LS-SVM & MLR QSAR workflow for predicting the inhibition of CXCR3 receptor by quinazolinone analogs.

Authors:  Antreas Afantitis; Georgia Melagraki; Haralambos Sarimveis; Panayiotis A Koutentis; Olga Igglessi-Markopoulou; George Kollias
Journal:  Mol Divers       Date:  2009-05-30       Impact factor: 2.943

3.  Predictive QSAR workflow for the in silico identification and screening of novel HDAC inhibitors.

Authors:  Georgia Melagraki; Antreas Afantitis; Haralambos Sarimveis; Panayiotis A Koutentis; George Kollias; Olga Igglessi-Markopoulou
Journal:  Mol Divers       Date:  2009-02-10       Impact factor: 2.943

4.  QSAR modelling of the toxicity to Tetrahymena pyriformis by balance of correlations.

Authors:  A A Toropov; A P Toropova; E Benfenati; A Manganaro
Journal:  Mol Divers       Date:  2009-08-14       Impact factor: 2.943

5.  Theoretical study of GSK-3α: neural networks QSAR studies for the design of new inhibitors using 2D descriptors.

Authors:  Isela García; Yagamare Fall; Xerardo García-Mera; Francisco Prado-Prado
Journal:  Mol Divers       Date:  2011-07-07       Impact factor: 2.943

  5 in total

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