Literature DB >> 16796570

Taxa-area relationships for microbes: the unsampled and the unseen.

Stephen Woodcock, Thomas P Curtis, Ian M Head, Mary Lunn, William T Sloan.   

Abstract

The recent observation of a power-law relationship, S proportional A(z), between number of taxa, S, and area, A, for microbial eukaryotes and bacteria suggests that this is one of the few generic relationships in ecology, applicable to plants, animals and microbes. However, the rate of increase in the number of species with area varies from approximately the fourth (z = 0.26) to as little as the 50th root (z = 0.0019) in microbes. This is an enormous range for which no quantitative explanation has been proffered. We show by sampling from synthetic populations that the disparity between sample and community sizes in microbial community surveys means z can be considerably underestimated and accrual of rare taxa with increasing area will not be detectable. Significant microbial taxa-area relationships will only be observed when changes in community structure within samples correlate with area. Thus, the very low z values observed recently cannot be used as the sole evidence in support of any particular community theory of community assembly. More generally, this suggests that our search for patterns and laws in the microbial world will be profoundly influenced and, potentially distorted by the sample sizes that are typical of microbial community surveys.

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Year:  2006        PMID: 16796570     DOI: 10.1111/j.1461-0248.2006.00929.x

Source DB:  PubMed          Journal:  Ecol Lett        ISSN: 1461-023X            Impact factor:   9.492


  32 in total

1.  Disconnect of microbial structure and function: enzyme activities and bacterial communities in nascent stream corridors.

Authors:  Aline Frossard; Linda Gerull; Michael Mutz; Mark O Gessner
Journal:  ISME J       Date:  2011-10-27       Impact factor: 10.302

2.  Freshwater bacterioplankton richness in oligotrophic lakes depends on nutrient availability rather than on species-area relationships.

Authors:  Jürg Brendan Logue; Silke Langenheder; Anders F Andersson; Stefan Bertilsson; Stina Drakare; Anders Lanzén; Eva S Lindström
Journal:  ISME J       Date:  2011-12-15       Impact factor: 10.302

3.  Placing the effects of leaf litter diversity on saprotrophic microorganisms in the context of leaf type and habitat.

Authors:  Lan Wu; Larry M Feinstein; Oscar Valverde-Barrantes; Mark W Kershner; Laura G Leff; Christopher B Blackwood
Journal:  Microb Ecol       Date:  2010-10-23       Impact factor: 4.552

4.  Divergent Co-occurrence Patterns and Assembly Processes Structure the Abundant and Rare Bacterial Communities in a Salt Marsh Ecosystem.

Authors:  Shicong Du; Francisco Dini-Andreote; Nan Zhang; Chunling Liang; Zhiyuan Yao; Huajun Zhang; Demin Zhang
Journal:  Appl Environ Microbiol       Date:  2020-06-17       Impact factor: 4.792

5.  What is the extent of prokaryotic diversity?

Authors:  Thomas P Curtis; Ian M Head; Mary Lunn; Stephen Woodcock; Patrick D Schloss; William T Sloan
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-11-29       Impact factor: 6.237

Review 6.  Microbial community structure and its functional implications.

Authors:  Jed A Fuhrman
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

7.  Tilting at windmills: a response to a recent critique of terminal restriction fragment length polymorphism data.

Authors:  Noah Fierer
Journal:  Appl Environ Microbiol       Date:  2007-12       Impact factor: 4.792

8.  Colloquium paper: microbes on mountainsides: contrasting elevational patterns of bacterial and plant diversity.

Authors:  Jessica A Bryant; Christine Lamanna; Hélène Morlon; Andrew J Kerkhoff; Brian J Enquist; Jessica L Green
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-11       Impact factor: 11.205

Review 9.  Patterns and processes of microbial community assembly.

Authors:  Diana R Nemergut; Steven K Schmidt; Tadashi Fukami; Sean P O'Neill; Teresa M Bilinski; Lee F Stanish; Joseph E Knelman; John L Darcy; Ryan C Lynch; Phillip Wickey; Scott Ferrenberg
Journal:  Microbiol Mol Biol Rev       Date:  2013-09       Impact factor: 11.056

10.  Spatial scaling of functional gene diversity across various microbial taxa.

Authors:  Jizhong Zhou; Sanghoon Kang; Christopher W Schadt; Charles T Garten
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-28       Impact factor: 11.205

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