Literature DB >> 16796379

Lipid mediator informatics-lipidomics: novel pathways in mapping resolution.

Charles N Serhan1, Song Hong, Yan Lu.   

Abstract

Lipidomics, the systematic decoding of lipid-based information in biosystems, is composed of identifying and profiling lipids and lipid-derived mediators. As currently practiced, lipidomics can be subdivided into architecture/membrane lipidomics and mediator lipidomics. The mapping of structural components and their relation to cell activation as well as generation of potent lipid mediators and networks involves a mass spectrometry-computational approach so that interrelationships and complex mediator networks important for cell homeostasis can be appreciated. Cell membranes are composed of a bilayer that contains phospholipids, fatty acids, integral membrane proteins, membrane-associated proteins, sphingolipids, and so on. The membrane composition of many cell types has been established. The components' organization and effect on cell function remains to be established, however, and is a quest for lipidomics. Here, we review liquid chromatography tandem mass spectrometry-based lipidomic analyses to address bioactive lipid mediators in signaling pathways and the roles of lipid-derived mediators in resolution of inflammation.

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Year:  2006        PMID: 16796379      PMCID: PMC3231579          DOI: 10.1007/bf02854899

Source DB:  PubMed          Journal:  AAPS J        ISSN: 1550-7416            Impact factor:   4.009


  30 in total

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Journal:  J Am Soc Mass Spectrom       Date:  1994-09       Impact factor: 3.109

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3.  Rainbow trout (Oncorhynchus mykiss) brain cells biosynthesize novel docosahexaenoic acid-derived resolvins and protectins-Mediator lipidomic analysis.

Authors:  Song Hong; Eric Tjonahen; Elizabeth L Morgan; Yan Lu; Charles N Serhan; Andrew F Rowley
Journal:  Prostaglandins Other Lipid Mediat       Date:  2005-06-13       Impact factor: 3.072

4.  Nutrition classics from The Journal of Biological Chemistry 82:345-67, 1929. A new deficiency disease produced by the rigid exclusion of fat from the diet.

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Review 5.  Mechanisms of action of docosahexaenoic acid in the nervous system.

Authors:  N Salem; B Litman; H Y Kim; K Gawrisch
Journal:  Lipids       Date:  2001-09       Impact factor: 1.880

6.  Lipid mediator class switching during acute inflammation: signals in resolution.

Authors:  B D Levy; C B Clish; B Schmidt; K Gronert; C N Serhan
Journal:  Nat Immunol       Date:  2001-07       Impact factor: 25.606

7.  Aspirin-triggered 15-epi-lipoxin A4 (ATL) generation by human leukocytes and murine peritonitis exudates: development of a specific 15-epi-LXA4 ELISA.

Authors:  N Chiang; T Takano; C B Clish; N A Petasis; H H Tai; C N Serhan
Journal:  J Pharmacol Exp Ther       Date:  1998-11       Impact factor: 4.030

8.  Neuroprotectin D1: a docosahexaenoic acid-derived docosatriene protects human retinal pigment epithelial cells from oxidative stress.

Authors:  Pranab K Mukherjee; Victor L Marcheselli; Charles N Serhan; Nicolas G Bazan
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-19       Impact factor: 11.205

9.  Phosphoinositide profiling in complex lipid mixtures using electrospray ionization mass spectrometry.

Authors:  Markus R Wenk; Louise Lucast; Gilbert Di Paolo; Anthony J Romanelli; Sharon F Suchy; Robert L Nussbaum; Gary W Cline; Gerald I Shulman; Walter McMurray; Pietro De Camilli
Journal:  Nat Biotechnol       Date:  2003-06-15       Impact factor: 54.908

10.  The critical evaluation of a comprehensive mass spectral library.

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Journal:  J Am Soc Mass Spectrom       Date:  1999-04       Impact factor: 3.262

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  7 in total

Review 1.  Novel lipid mediators and resolution mechanisms in acute inflammation: to resolve or not?

Authors:  Charles N Serhan
Journal:  Am J Pathol       Date:  2010-09-02       Impact factor: 4.307

Review 2.  Endogenous pro-resolving and anti-inflammatory lipid mediators: a new pharmacologic genus.

Authors:  C N Serhan; N Chiang
Journal:  Br J Pharmacol       Date:  2007-10-29       Impact factor: 8.739

Review 3.  Role of neutrophils in innate immunity: a systems biology-level approach.

Authors:  Scott D Kobayashi; Frank R DeLeo
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2009 Nov-Dec

Review 4.  Resolvins: natural agonists for resolution of pulmonary inflammation.

Authors:  Mohib Uddin; Bruce D Levy
Journal:  Prog Lipid Res       Date:  2010-09-29       Impact factor: 16.195

5.  Neutrophils in innate immunity and systems biology-level approaches.

Authors:  Viktoria Rungelrath; Scott D Kobayashi; Frank R DeLeo
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2019-06-20

Review 6.  The omega-3 fatty acid nutritional landscape: health benefits and sources.

Authors:  Richard J Deckelbaum; Claudia Torrejon
Journal:  J Nutr       Date:  2012-02-08       Impact factor: 4.798

7.  Docosahexaenoic acid metabolome in neural tumors: identification of cytotoxic intermediates.

Authors:  Helena Gleissman; Rong Yang; Kimberly Martinod; Magnus Lindskog; Charles N Serhan; John Inge Johnsen; Per Kogner
Journal:  FASEB J       Date:  2009-11-04       Impact factor: 5.191

  7 in total

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