Literature DB >> 16791689

The first gene-based map of Lupinus angustifolius L.-location of domestication genes and conserved synteny with Medicago truncatula.

Matthew N Nelson1, Huyen T T Phan, Simon R Ellwood, Paula M Moolhuijzen, James Hane, Angela Williams, Clare E O'Lone, John Fosu-Nyarko, Marie Scobie, Mehmet Cakir, Michael G K Jones, Matthew Bellgard, Michał Ksiazkiewicz, Bogdan Wolko, Susan J Barker, Richard P Oliver, Wallace A Cowling.   

Abstract

We report the first gene-based linkage map of Lupinus angustifolius (narrow-leafed lupin) and its comparison to the partially sequenced genome of Medicago truncatula. The map comprises 382 loci in 20 major linkage groups, two triplets, three pairs and 11 unlinked loci and is 1,846 cM in length. The map was generated from the segregation of 163 RFLP markers, 135 gene-based PCR markers, 75 AFLP and 4 AFLP-derived SCAR markers in a mapping population of 93 recombinant inbred lines, derived from a cross between domesticated and wild-type parents. This enabled the mapping of five major genes controlling key domestication traits in L. angustifolius. Using marker sequence data, the L. angustifolius genetic map was compared to the partially completed M. truncatula genome sequence. We found evidence of conserved synteny in some regions of the genome despite the wide evolutionary distance between these legume species. We also found new evidence of widespread duplication within the L. angustifolius genome.

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Year:  2006        PMID： 16791689     DOI： 10.1007/s00122-006-0288-0

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN： 0040-5752            Impact factor:   5.699


  24 in total

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Authors:  K F Manly; R H Cudmore; J M Meer
Journal:  Mamm Genome       Date:  2001-12       Impact factor: 2.957

2.  Localisation of rDNA in the Lupinus genome during the cell cycle.

Authors:  Barbara Naganowska; Anna Zielińska
Journal:  J Appl Genet       Date:  2004       Impact factor: 3.240

3.  AFLP analysis using GeneMapper software and an Excel macro that aligns and converts output to binary.

Authors:  Timothy A Rinehart
Journal:  Biotechniques       Date:  2004-08       Impact factor: 1.993

Review 4.  Updating the 'crop circle'.

Authors:  Katrien M Devos
Journal:  Curr Opin Plant Biol       Date:  2005-04       Impact factor: 7.834

5.  AFLP: a new technique for DNA fingerprinting.

Authors:  P Vos; R Hogers; M Bleeker; M Reijans; T van de Lee; M Hornes; A Frijters; J Pot; J Peleman; M Kuiper
Journal:  Nucleic Acids Res       Date:  1995-11-11       Impact factor: 16.971

6.  Genome duplication in soybean (Glycine subgenus soja).

Authors:  R C Shoemaker; K Polzin; J Labate; J Specht; E C Brummer; T Olson; N Young; V Concibido; J Wilcox; J P Tamulonis; G Kochert; H R Boerma
Journal:  Genetics       Date:  1996-09       Impact factor: 4.562

7.  Estimating genome conservation between crop and model legume species.

Authors:  Hong-Kyu Choi; Jeong-Hwan Mun; Dong-Jin Kim; Hongyan Zhu; Jong-Min Baek; Joanne Mudge; Bruce Roe; Noel Ellis; Jeff Doyle; Gyorgy B Kiss; Nevin D Young; Douglas R Cook
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-15       Impact factor: 11.205

8.  Frequent nonreciprocal translocations in the amphidiploid genome of oilseed rape (Brassica napus).

Authors:  A G Sharpe; I A Parkin; D J Keith; D J Lydiate
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9.  Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana.

Authors:  Lewis Lukens; Fei Zou; Derek Lydiate; Isobel Parkin; Tom Osborn
Journal:  Genetics       Date:  2003-05       Impact factor: 4.562

10.  Comparative physical mapping reveals features of microsynteny between Glycine max, Medicago truncatula, and Arabidopsis thaliana.

Authors:  H H Yan; J Mudge; D-J Kim; R C Shoemaker; D R Cook; N D Young
Journal:  Genome       Date:  2004-02       Impact factor: 2.166
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  55 in total

1.  Extensive macrosynteny between Medicago truncatula and Lens culinaris ssp. culinaris.

Authors:  Huyen T T Phan; Simon R Ellwood; James K Hane; Rebecca Ford; Michael Materne; Richard P Oliver
Journal:  Theor Appl Genet       Date:  2006-11-22       Impact factor: 5.699

Review 2.  Genome sequencing and genome resources in model legumes.

Authors:  Shusei Sato; Yasukazu Nakamura; Erika Asamizu; Sachiko Isobe; Satoshi Tabata
Journal:  Plant Physiol       Date:  2007-06       Impact factor: 8.340

Review 3.  Sequencing consolidates molecular markers with plant breeding practice.

Authors:  Huaan Yang; Chengdao Li; Hon-Ming Lam; Jonathan Clements; Guijun Yan; Shancen Zhao
Journal:  Theor Appl Genet       Date:  2015-03-28       Impact factor: 5.699

4.  New evidence of ancestral polyploidy in the Genistoid legume Lupinus angustifolius L. (narrow-leafed lupin).

Authors:  Magdalena Kroc; Grzegorz Koczyk; Wojciech Święcicki; Andrzej Kilian; Matthew N Nelson
Journal:  Theor Appl Genet       Date:  2014-03-15       Impact factor: 5.699

5.  Identification of chromosome regions controlling seed storage proteins of narrow-leafed lupin (Lupinus angustifolius).

Authors:  Xin Li; Shahidul Islam; Huaan Yang; Wujun Ma; Guijun Yan
Journal:  J Plant Res       Date:  2012-10-23       Impact factor: 2.629

6.  Aligning a new reference genetic map of Lupinus angustifolius with the genome sequence of the model legume, Lotus japonicus.

Authors:  Matthew N Nelson; Paula M Moolhuijzen; Jeffrey G Boersma; Magdalena Chudy; Karolina Lesniewska; Matthew Bellgard; Richard P Oliver; Wojciech Swiecicki; Bogdan Wolko; Wallace A Cowling; Simon R Ellwood
Journal:  DNA Res       Date:  2010-02-04       Impact factor: 4.458

7.  Polyploidy did not predate the evolution of nodulation in all legumes.

Authors:  Steven B Cannon; Dan Ilut; Andrew D Farmer; Sonja L Maki; Gregory D May; Susan R Singer; Jeff J Doyle
Journal:  PLoS One       Date:  2010-07-16       Impact factor: 3.240

8.  The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.).

Authors:  R K Varshney; D J Bertioli; M C Moretzsohn; V Vadez; L Krishnamurthy; R Aruna; S N Nigam; B J Moss; K Seetha; K Ravi; G He; S J Knapp; D A Hoisington
Journal:  Theor Appl Genet       Date:  2008-12-02       Impact factor: 5.699

9.  An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes.

Authors:  David J Bertioli; Marcio C Moretzsohn; Lene H Madsen; Niels Sandal; Soraya C M Leal-Bertioli; Patricia M Guimarães; Birgit K Hougaard; Jakob Fredslund; Leif Schauser; Anna M Nielsen; Shusei Sato; Satoshi Tabata; Steven B Cannon; Jens Stougaard
Journal:  BMC Genomics       Date:  2009-01-23       Impact factor: 3.969

10.  The first genetic and comparative map of white lupin (Lupinus albus L.): identification of QTLs for anthracnose resistance and flowering time, and a locus for alkaloid content.

Authors:  Huyen T T Phan; Simon R Ellwood; Kedar Adhikari; Matthew N Nelson; Richard P Oliver
Journal:  DNA Res       Date:  2007-05-26       Impact factor: 4.458
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