Literature DB >> 17556522

Genome sequencing and genome resources in model legumes.

Shusei Sato1, Yasukazu Nakamura, Erika Asamizu, Sachiko Isobe, Satoshi Tabata.   

Abstract

Mesh：

Year:  2007        PMID： 17556522      PMCID： PMC1914170          DOI： 10.1104/pp.107.097493

Source DB:  PubMed          Journal:  Plant Physiol        ISSN： 0032-0889            Impact factor:   8.340


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  49 in total

1.  A tool for analyzing and annotating genomic sequences.

Authors:  X Huang; M D Adams; H Zhou; A R Kerlavage
Journal:  Genomics       Date:  1997-11-15       Impact factor: 5.736

2.  GeneMark.hmm: new solutions for gene finding.

Authors:  A V Lukashin; M Borodovsky
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

3.  Metabolic engineering of isoflavonoid biosynthesis in alfalfa.

Authors:  Bettina E Deavours; Richard A Dixon
Journal:  Plant Physiol       Date:  2005-07-08       Impact factor: 8.340

4.  Significant microsynteny with new evolutionary highlights is detected between Arabidopsis and legume model plants despite the lack of macrosynteny.

Authors:  Zoltán Kevei; Andrea Seres; Attila Kereszt; Péter Kaló; Péter Kiss; Gábor Tóth; Gabriella Endre; György B Kiss
Journal:  Mol Genet Genomics       Date:  2005-11-05       Impact factor: 3.291

5.  Prediction of complete gene structures in human genomic DNA.

Authors:  C Burge; S Karlin
Journal:  J Mol Biol       Date:  1997-04-25       Impact factor: 5.469

6.  Complementation of plant mutants with large genomic DNA fragments by a transformation-competent artificial chromosome vector accelerates positional cloning.

Authors:  Y G Liu; Y Shirano; H Fukaki; Y Yanai; M Tasaka; S Tabata; D Shibata
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

7.  Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information.

Authors:  S M Hebsgaard; P G Korning; N Tolstrup; J Engelbrecht; P Rouzé; S Brunak
Journal:  Nucleic Acids Res       Date:  1996-09-01       Impact factor: 16.971

8.  Prediction of locally optimal splice sites in plant pre-mRNA with applications to gene identification in Arabidopsis thaliana genomic DNA.

Authors:  V Brendel; J Kleffe
Journal:  Nucleic Acids Res       Date:  1998-10-15       Impact factor: 16.971

9.  The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.

Authors:  Y Lee; J Tsai; S Sunkara; S Karamycheva; G Pertea; R Sultana; V Antonescu; A Chan; F Cheung; J Quackenbush
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

10.  The Legume Information System (LIS): an integrated information resource for comparative legume biology.

Authors:  Michael D Gonzales; Eric Archuleta; Andrew Farmer; Kamal Gajendran; David Grant; Randy Shoemaker; William D Beavis; Mark E Waugh
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971
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  21 in total

1.  Quantitative trait locus analysis of symbiotic nitrogen fixation activity in the model legume Lotus japonicus.

Authors:  Akiyoshi Tominaga; Takahiro Gondo; Ryo Akashi; Shao-Hui Zheng; Susumu Arima; Akihiro Suzuki
Journal:  J Plant Res       Date:  2011-10-19       Impact factor: 2.629

2.  Lotus japonicus E3 ligase SEVEN IN ABSENTIA4 destabilizes the symbiosis receptor-like kinase SYMRK and negatively regulates rhizobial infection.

Authors:  Griet Den Herder; Satoko Yoshida; Meritxell Antolín-Llovera; Martina K Ried; Martin Parniske
Journal:  Plant Cell       Date:  2012-04-24       Impact factor: 11.277

Review 3.  Legume small GTPases and their role in the establishment of symbiotic associations with Rhizobium spp.

Authors:  Bayram Yuksel; Abdul R Memon
Journal:  Plant Signal Behav       Date:  2009-04

4.  Genomic inventory and transcriptional analysis of Medicago truncatula transporters.

Authors:  Vagner A Benedito; Haiquan Li; Xinbin Dai; Maren Wandrey; Ji He; Rakesh Kaundal; Ivone Torres-Jerez; S Karen Gomez; Maria J Harrison; Yuhong Tang; Patrick X Zhao; Michael K Udvardi
Journal:  Plant Physiol       Date:  2009-12-18       Impact factor: 8.340

5.  TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics.

Authors:  Keiichi Mochida; Takuhiro Yoshida; Tetsuya Sakurai; Yasunari Ogihara; Kazuo Shinozaki
Journal:  Plant Physiol       Date:  2009-05-15       Impact factor: 8.340

6.  Cloning and characterization of a functional flavanone-3ß-hydroxylase gene from Medicago truncatula.

Authors:  Xiaoye Shen; Stefan Martens; Mingliang Chen; Daofeng Li; Jiangli Dong; Tao Wang
Journal:  Mol Biol Rep       Date:  2009-11-04       Impact factor: 2.316

7.  Signaling from soybean roots to rhizobium: An ATP-binding cassette-type transporter mediates genistein secretion.

Authors:  Akifumi Sugiyama; Nobukazu Shitan; Kazufumi Yazaki
Journal:  Plant Signal Behav       Date:  2008-01

8.  Metabolomics reveals novel pathways and differential mechanistic and elicitor-specific responses in phenylpropanoid and isoflavonoid biosynthesis in Medicago truncatula cell cultures.

Authors:  Mohamed A Farag; David V Huhman; Richard A Dixon; Lloyd W Sumner
Journal:  Plant Physiol       Date:  2007-11-30       Impact factor: 8.340

9.  Recent Progress in Development of Tnt1 Functional Genomics Platform for Medicago truncatula and Lotus japonicus in Bulgaria.

Authors:  Miglena Revalska; Valya Vassileva; Sofie Goormachtig; Tom Van Hautegem; Pascal Ratet; Anelia Iantcheva
Journal:  Curr Genomics       Date:  2011-04       Impact factor: 2.236

10.  The National BioResource Project (NBRP) Lotus and Glycine in Japan.

Authors:  Masatsugu Hashiguchi; Jun Abe; Toshio Aoki; Toyoaki Anai; Akihiro Suzuki; Ryo Akashi
Journal:  Breed Sci       Date:  2012-02-04       Impact factor: 2.086
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