Literature DB >> 16788205

The crystal structure of beryllofluoride Spo0F in complex with the phosphotransferase Spo0B represents a phosphotransfer pretransition state.

Kottayil I Varughese1, Igor Tsigelny, Haiyan Zhao.   

Abstract

A number of regulatory circuits in biological systems function through the exchange of phosphoryl groups from one protein to another. Spo0F and Spo0B are components of a phosphorelay that control sporulation in the bacterium Bacillus subtilis through the exchange of a phosphoryl group. Using beryllofluoride as a mimic for phosphorylation, we trapped the interaction of the phosphorylated Spo0F with Spo0B in the crystal lattice. The transition state of phosphoryl transfer continues to be a highly debated issue, as to whether it is associative or dissociative in nature. The geometry of Spo0F binding to Spo0B favors an associative mechanism for phosphoryl transfer. In order to visualize the autophosphorylation of the histidine kinase, KinA, and the subsequent phosphoryl transfer to Spo0F, we generated in silico models representing these reaction steps.

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Year:  2006        PMID: 16788205      PMCID: PMC1482986          DOI: 10.1128/JB.00160-06

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  42 in total

1.  A computational analysis on the specificity of interactions between histidine kinases and response regulators.

Authors:  Debashis Mukhopadhyay; Kottayil I Varughese
Journal:  J Biomol Struct Dyn       Date:  2005-04

2.  Conformational changes of Spo0F along the phosphotransfer pathway.

Authors:  Kottayil I Varughese
Journal:  J Bacteriol       Date:  2005-12       Impact factor: 3.490

3.  A source of response regulator autophosphatase activity: the critical role of a residue adjacent to the Spo0F autophosphorylation active site.

Authors:  J Zapf; M Madhusudan; C E Grimshaw; J A Hoch; K I Varughese; J M Whiteley
Journal:  Biochemistry       Date:  1998-05-26       Impact factor: 3.162

4.  Synergistic effects of substrate-induced conformational changes in phosphoglycerate kinase activation.

Authors:  B E Bernstein; P A Michels; W G Hol
Journal:  Nature       Date:  1997-01-16       Impact factor: 49.962

5.  Molecular recognition in signal transduction: the interaction surfaces of the Spo0F response regulator with its cognate phosphorelay proteins revealed by alanine scanning mutagenesis.

Authors:  Y L Tzeng; J A Hoch
Journal:  J Mol Biol       Date:  1997-09-19       Impact factor: 5.469

Review 6.  NMR studies of the mechanism of enzyme action.

Authors:  A S Mildvan; D C Fry
Journal:  Adv Enzymol Relat Areas Mol Biol       Date:  1987

7.  Structural and mutational analysis of the PhoQ histidine kinase catalytic domain. Insight into the reaction mechanism.

Authors:  A Marina; C Mott; A Auyzenberg; W A Hendrickson; C D Waldburger
Journal:  J Biol Chem       Date:  2001-08-07       Impact factor: 5.157

8.  Mapping the transition state for ATP hydrolysis: implications for enzymatic catalysis.

Authors:  S J Admiraal; D Herschlag
Journal:  Chem Biol       Date:  1995-11

9.  A response regulatory protein with the site of phosphorylation blocked by an arginine interaction: crystal structure of Spo0F from Bacillus subtilis.

Authors:  M Madhusudan; J Zapf; J A Hoch; J M Whiteley; N H Xuong; K I Varughese
Journal:  Biochemistry       Date:  1997-10-21       Impact factor: 3.162

10.  Initiation of sporulation in B. subtilis is controlled by a multicomponent phosphorelay.

Authors:  D Burbulys; K A Trach; J A Hoch
Journal:  Cell       Date:  1991-02-08       Impact factor: 41.582

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  32 in total

Review 1.  Small angle neutron and X-ray scattering in structural biology: recent examples from the literature.

Authors:  Cameron Neylon
Journal:  Eur Biophys J       Date:  2008-01-23       Impact factor: 1.733

2.  Structural basis of a physical blockage mechanism for the interaction of response regulator PmrA with connector protein PmrD from Klebsiella pneumoniae.

Authors:  Shih-Chi Luo; Yuan-Chao Lou; Mahalingam Rajasekaran; Yi-Wei Chang; Chwan-Deng Hsiao; Chinpan Chen
Journal:  J Biol Chem       Date:  2013-07-16       Impact factor: 5.157

3.  High-resolution protein complexes from integrating genomic information with molecular simulation.

Authors:  Alexander Schug; Martin Weigt; José N Onuchic; Terence Hwa; Hendrik Szurmant
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-17       Impact factor: 11.205

4.  Co-evolving motions at protein-protein interfaces of two-component signaling systems identified by covariance analysis.

Authors:  Hendrik Szurmant; Benjamin G Bobay; Robert A White; Daniel M Sullivan; Richele J Thompson; Terence Hwa; James A Hoch; John Cavanagh
Journal:  Biochemistry       Date:  2008-06-28       Impact factor: 3.162

5.  In vivo domain-based functional analysis of the major sporulation sensor kinase, KinA, in Bacillus subtilis.

Authors:  Prahathees Eswaramoorthy; Tao Guo; Masaya Fujita
Journal:  J Bacteriol       Date:  2009-06-26       Impact factor: 3.490

Review 6.  Circadian oscillator proteins across the kingdoms of life: structural aspects.

Authors:  Reena Saini; Mariusz Jaskolski; Seth J Davis
Journal:  BMC Biol       Date:  2019-02-18       Impact factor: 7.431

7.  Identical phosphatase mechanisms achieved through distinct modes of binding phosphoprotein substrate.

Authors:  Y Pazy; M A Motaleb; M T Guarnieri; N W Charon; R Zhao; R E Silversmith
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-14       Impact factor: 11.205

8.  SpaK/SpaR two-component system characterized by a structure-driven domain-fusion method and in vitro phosphorylation studies.

Authors:  Anu Chakicherla; Carol L Ecale Zhou; Martha Ligon Dang; Virginia Rodriguez; J Norman Hansen; Adam Zemla
Journal:  PLoS Comput Biol       Date:  2009-06-05       Impact factor: 4.475

9.  Using structural information to change the phosphotransfer specificity of a two-component chemotaxis signalling complex.

Authors:  Christian H Bell; Steven L Porter; Annabel Strawson; David I Stuart; Judith P Armitage
Journal:  PLoS Biol       Date:  2010-02-09       Impact factor: 8.029

Review 10.  Insights from coarse-grained Gō models for protein folding and dynamics.

Authors:  Ronald D Hills; Charles L Brooks
Journal:  Int J Mol Sci       Date:  2009-03-02       Impact factor: 6.208

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