Literature DB >> 16787083

Two-state reactivity, electromerism, tautomerism, and "surprise" isomers in the formation of compound II of the enzyme horseradish peroxidase from the principal species, compound I.

Etienne Derat1, Sason Shaik.   

Abstract

QM and QM/MM calculations on Compound II, the enigmatic species in the catalytic cycle of the horseradish peroxidase enzyme, reveal six low-lying isomers. The principal isomer is the triplet oxo-ferryl form (PorFe(IV)=O) that yields the hydroxo-ferryl isomer (PorFe(IV)-OH+). These are the only forms observed in experimental studies. Theory shows, however, that these are the least stable isomers of Compound II. The two most stable forms are the singlet and triplet states of the Por+*Fe(III)-OH electromer. In addition, theory reveals species never considered in heme enzymes: the singlet and triplet states of the Por+*Fe(III)-OH2 electromer. The computational results reproduce the experimental features of the known isomers and enable us to draw relationships and make predictions regarding the missing ones. For example, while the "surprise" species, singlet and triplet Por+*Fe(III)-OH2, have never been considered in heme chemistry, the calculated Fe-O bond lengths indicate that these isomers may have, in fact, been observed in one of the two opposing EXAFS studies reported previously. Furthermore, these ferric-aqua complexes could be responsible for the reported 18O exchange with bulk water. It is clear, therefore, that the role of Compound II in the HRP cycle is considerably more multi-faceted than has been revealed so far. Our suggested multi-state reactivity scheme provides a paradigm for Compound II species. The calculated Mössbauer parameters may be helpful toward eventual characterization of these missing isomers of Compound II.

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Year:  2006        PMID: 16787083     DOI: 10.1021/ja0600734

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  8 in total

1.  Transition metal spin state energetics and noninnocent systems: challenges for DFT in the bioinorganic arena.

Authors:  Abhik Ghosh
Journal:  J Biol Inorg Chem       Date:  2006-07-14       Impact factor: 3.358

2.  Enzymatic degradation of A2E, a retinal pigment epithelial lipofuscin bisretinoid.

Authors:  Yalin Wu; Jilin Zhou; Nathan Fishkin; Bruce E Rittmann; Janet R Sparrow
Journal:  J Am Chem Soc       Date:  2011-02-02       Impact factor: 15.419

3.  Ferryl protonation in oxoiron(IV) porphyrins and its role in oxygen transfer.

Authors:  Nicholas C Boaz; Seth R Bell; John T Groves
Journal:  J Am Chem Soc       Date:  2015-02-17       Impact factor: 15.419

4.  Replacement of tyrosine residues by phenylalanine in cytochrome P450cam alters the formation of Cpd II-like species in reactions with artificial oxidants.

Authors:  Tatyana Spolitak; John H Dawson; David P Ballou
Journal:  J Biol Inorg Chem       Date:  2008-05       Impact factor: 3.358

5.  Consecutive Marcus Electron and Proton Transfer in Heme Peroxidase Compound II-Catalysed Oxidation Revealed by Arrhenius Plots.

Authors:  Audrius Laurynėnas; Marius Butkevičius; Marius Dagys; Sergey Shleev; Juozas Kulys
Journal:  Sci Rep       Date:  2019-10-01       Impact factor: 4.379

6.  Hemin-catalyzed oxidative oligomerization of p-aminodiphenylamine (PADPA) in the presence of aqueous sodium dodecylbenzenesulfonate (SDBS) micelles.

Authors:  Nemanja Cvjetan; Reinhard Kissner; Danica Bajuk-Bogdanović; Gordana Ćirić-Marjanović; Peter Walde
Journal:  RSC Adv       Date:  2022-05-03       Impact factor: 4.036

Review 7.  Challenging Density Functional Theory Calculations with Hemes and Porphyrins.

Authors:  Sam P de Visser; Martin J Stillman
Journal:  Int J Mol Sci       Date:  2016-04-07       Impact factor: 5.923

8.  How Does Replacement of the Axial Histidine Ligand in Cytochrome c Peroxidase by Nδ-Methyl Histidine Affect Its Properties and Functions? A Computational Study.

Authors:  Calvin W Z Lee; M Qadri E Mubarak; Anthony P Green; Sam P de Visser
Journal:  Int J Mol Sci       Date:  2020-09-27       Impact factor: 5.923

  8 in total

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