Literature DB >> 16784868

Ribokinase from E. coli: expression, purification, and substrate specificity.

Dmitry V Chuvikovsky1, Roman S Esipov, Yuri S Skoblov, Larisa A Chupova, Tatyana I Muravyova, Anatoly I Miroshnikov, Seppo Lapinjoki, Igor A Mikhailopulo.   

Abstract

Ribokinase (RK) was expressed in the Escherichia coli ER2566 cells harboring the constructed expression plasmid encompassing the rbsK gene, encoding ribokinase. The recombinant enzyme was purified from sonicated cells by double chromatography to afford a preparation that was ca. 90% pure and had specific activity of 75 micromol/min mg protein. Catalytic activity of RK: (i) is strongly dependent on the presence of monovalent cations (potassium>>>ammonium>cesium), and (ii) is cooperatively enhanced by divalent magnesium and manganese ions. Besides D-ribose and 2-deoxy-D-ribose, RK was found to catalyze the 5-O-phosphorylation of D-arabinose, D-xylose, and D-fructose in the presence of ATP, and potassium and magnesium ions; L-ribose and L-arabinose are not substrates for the recombinant enzyme. A new radiochemical method for monitoring the formation of D-pentofuranose-5-[32P]phosphates in the presence of [gamma-32P]ATP and RK is reported.

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Year:  2006        PMID: 16784868     DOI: 10.1016/j.bmc.2006.05.057

Source DB:  PubMed          Journal:  Bioorg Med Chem        ISSN: 0968-0896            Impact factor:   3.641


  14 in total

1.  Cloning, purification, crystallization and preliminary crystallographic analysis of a ribokinase from Staphylococcus aureus.

Authors:  Lin Wang; Haipeng Wang; Jianbin Ruan; Changlin Tian; Baolin Sun; Jianye Zang
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-05-22

2.  Identification of the Plant Ribokinase and Discovery of a Role for Arabidopsis Ribokinase in Nucleoside Metabolism.

Authors:  John W Riggs; Nathan C Rockwell; Philip C Cavales; Judy Callis
Journal:  J Biol Chem       Date:  2016-09-06       Impact factor: 5.157

3.  Transition State Analysis of Adenosine Triphosphate Phosphoribosyltransferase.

Authors:  Gert-Jan Moggré; Myles B Poulin; Peter C Tyler; Vern L Schramm; Emily J Parker
Journal:  ACS Chem Biol       Date:  2017-09-19       Impact factor: 5.100

4.  Expression, purification and analysis of the activity of enzymes from the pentose phosphate pathway.

Authors:  Patrick K Arthur; Luigi J Alvarado; T Kwaku Dayie
Journal:  Protein Expr Purif       Date:  2010-11-24       Impact factor: 1.650

Review 5.  Biological synthesis of nicotinamide mononucleotide.

Authors:  Qi Shen; Shi-Jia Zhang; Yu-Zhen Xue; Feng Peng; Dong-Yuan Cheng; Ya-Ping Xue; Yu-Guo Zheng
Journal:  Biotechnol Lett       Date:  2021-10-09       Impact factor: 2.461

6.  Crystallization and preliminary X-ray analysis of a ribokinase from Vibrio cholerae O395.

Authors:  Rakhi Paul; Madhumita Dandopath Patra; Ramanuj Banerjee; Udayaditya Sen
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-07-23       Impact factor: 1.056

7.  Structure-activity relationship for adenosine kinase from Mycobacterium tuberculosis II. Modifications to the ribofuranosyl moiety.

Authors:  Mary C Long; Sue C Shaddix; Omar Moukha-Chafiq; Joseph A Maddry; Lisa Nagy; William B Parker
Journal:  Biochem Pharmacol       Date:  2008-02-02       Impact factor: 5.858

8.  New trends in nucleoside biotechnology.

Authors:  I A Mikhailopulo; A I Miroshnikov
Journal:  Acta Naturae       Date:  2010-07       Impact factor: 1.845

9.  Ribose utilization by the human commensal Bifidobacterium breve UCC2003.

Authors:  Karina Pokusaeva; Ana Rute Neves; Aldert Zomer; Mary O'Connell-Motherway; John MacSharry; Peter Curley; Gerald F Fitzgerald; Douwe van Sinderen
Journal:  Microb Biotechnol       Date:  2009-10-15       Impact factor: 5.813

10.  The chemoenzymatic synthesis of clofarabine and related 2'-deoxyfluoroarabinosyl nucleosides: the electronic and stereochemical factors determining substrate recognition by E. coli nucleoside phosphorylases.

Authors:  Ilja V Fateev; Konstantin V Antonov; Irina D Konstantinova; Tatyana I Muravyova; Frank Seela; Roman S Esipov; Anatoly I Miroshnikov; Igor A Mikhailopulo
Journal:  Beilstein J Org Chem       Date:  2014-07-22       Impact factor: 2.883

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