Literature DB >> 16780604

The experimental survey of protein-folding energy landscapes.

Mikael Oliveberg1, Peter G Wolynes.   

Abstract

We review what has been learned about the protein-folding problem from experimental kinetic studies. These studies reveal patterns of both great richness and surprising simplicity. The patterns can be interpreted in terms of proteins possessing an energy landscape which is largely, but not completely, funnel-like. Issues such as speed limitations of folding, the robustness of folding, the origin of barriers and cooperativity and the ensemble nature of transition states, intermediate and traps are assessed using the results from several experimental groups highlighting energy-landscape ideas as an interpretive framework.

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Year:  2006        PMID: 16780604     DOI: 10.1017/S0033583506004185

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  130 in total

1.  Trimming down a protein structure to its bare foldons: spatial organization of the cooperative unit.

Authors:  Ellinor Haglund; Jens Danielsson; Saraboji Kadhirvel; Magnus O Lindberg; Derek T Logan; Mikael Oliveberg
Journal:  J Biol Chem       Date:  2011-11-22       Impact factor: 5.157

2.  Folding without charges.

Authors:  Martin Kurnik; Linda Hedberg; Jens Danielsson; Mikael Oliveberg
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-27       Impact factor: 11.205

3.  Visualizing transient protein-folding intermediates by tryptophan-scanning mutagenesis.

Authors:  Alexis Vallée-Bélisle; Stephen W Michnick
Journal:  Nat Struct Mol Biol       Date:  2012-06-10       Impact factor: 15.369

4.  Deciphering the hidden informational content of protein sequences: foldability of proinsulin hinges on a flexible arm that is dispensable in the mature hormone.

Authors:  Ming Liu; Qing-xin Hua; Shi-Quan Hu; Wenhua Jia; Yanwu Yang; Sunil Evan Saith; Jonathan Whittaker; Peter Arvan; Michael A Weiss
Journal:  J Biol Chem       Date:  2010-07-27       Impact factor: 5.157

5.  The origin of nonmonotonic complex behavior and the effects of nonnative interactions on the diffusive properties of protein folding.

Authors:  Ronaldo J Oliveira; Paul C Whitford; Jorge Chahine; Jin Wang; José N Onuchic; Vitor B P Leite
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

6.  Insights into protein folding mechanisms from large scale analysis of mutational effects.

Authors:  Athi N Naganathan; Victor Muñoz
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-23       Impact factor: 11.205

7.  Experimental snapshots of a protein-DNA binding landscape.

Authors:  Ignacio E Sánchez; Diego U Ferreiro; Mariano Dellarole; Gonzalo de Prat-Gay
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-07       Impact factor: 11.205

8.  The plastic energy landscape of protein folding: a triangular folding mechanism with an equilibrium intermediate for a small protein domain.

Authors:  S Raza Haq; Maike C Jürgens; Celestine N Chi; Cha-San Koh; Lisa Elfström; Maria Selmer; Stefano Gianni; Per Jemth
Journal:  J Biol Chem       Date:  2010-03-30       Impact factor: 5.157

9.  Denaturant-dependent folding of GFP.

Authors:  Govardhan Reddy; Zhenxing Liu; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-09       Impact factor: 11.205

10.  Early turn formation and chain collapse drive fast folding of the major cold shock protein CspA of Escherichia coli.

Authors:  Dung M Vu; Scott H Brewer; R Brian Dyer
Journal:  Biochemistry       Date:  2012-11-01       Impact factor: 3.162

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