Literature DB >> 16780368

Translesion synthesis across 1,N2-ethenoguanine by human DNA polymerases.

Jeong-Yun Choi1, Hong Zang, Karen C Angel, Ivan D Kozekov, Angela K Goodenough, Carmelo J Rizzo, F Peter Guengerich.   

Abstract

1,N(2)-Etheno(epsilon)guanine (epsilon) is formed in DNA as a result of exposure to certain vinyl monomers (e.g., vinyl chloride) or from lipid peroxidation. This lesion has been shown to be mutagenic in bacteria and mammalian cells. 1,N(2)-epsilon-G has been shown to block several model replicative DNA polymerases (pols), with limited bypass. Recently, an archebacterial DNA pol, Sulfolobus solfataricus Dpo4, has been shown to copy past 1,N(2)-epsilon-G. In this study, we examined the abilities of recombinant, full-length human pol delta and three human translesion DNA pols to copy past 1,N(2)-epsilon-G. The replicative pol, pol delta, was completely blocked. Pols iota and kappa showed similar rates of incorporation of dTTP and dCTP. Pol eta was clearly the most active of these pols in copying past 1,N(2)-epsilon-G, incorporating in the order dGTP > dATP > dCTP, regardless of whether the base 5' of 1,N(2)-epsilon-G in the template was C or T. Pol eta also had the highest error frequency opposite 1,N(2)-epsilon-G. Analysis of the extended products of the pol eta reactions by mass spectrometry indicated only two products, both of which had G incorporated opposite 1,N(2)-epsilon-G and all other base pairing being normal (i.e., G:C and A:T). One-half of the products contained an additional A at the 3'-end, presumably arising from a noninformational blunt end addition or possibly a slipped insertion mechanism at the end of the primer-template replication process. In summary, the most efficient of the four human DNA pols was pol eta, which appeared to insert G opposite 1,N(2)-epsilon-G and then copy correctly. This pattern differs with the same oligonucleotide sequences and 1,N(2)-epsilon-G observed using Dpo4, emphasizing the importance of pols in mutagenesis events.

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Year:  2006        PMID: 16780368      PMCID: PMC3130186          DOI: 10.1021/tx060051v

Source DB:  PubMed          Journal:  Chem Res Toxicol        ISSN: 0893-228X            Impact factor:   3.739


  36 in total

1.  Mechanism of efficient and accurate nucleotide incorporation opposite 7,8-dihydro-8-oxoguanine by Saccharomyces cerevisiae DNA polymerase eta.

Authors:  Karissa D Carlson; M Todd Washington
Journal:  Mol Cell Biol       Date:  2005-03       Impact factor: 4.272

2.  DNA adduct bypass polymerization by Sulfolobus solfataricus DNA polymerase Dpo4: analysis and crystal structures of multiple base pair substitution and frameshift products with the adduct 1,N2-ethenoguanine.

Authors:  Hong Zang; Angela K Goodenough; Jeong-Yun Choi; Adriana Irimia; Lioudmila V Loukachevitch; Ivan D Kozekov; Karen C Angel; Carmelo J Rizzo; Martin Egli; F Peter Guengerich
Journal:  J Biol Chem       Date:  2005-06-17       Impact factor: 5.157

3.  Analysis of nucleotide insertion and extension at 8-oxo-7,8-dihydroguanine by replicative T7 polymerase exo- and human immunodeficiency virus-1 reverse transcriptase using steady-state and pre-steady-state kinetics.

Authors:  L L Furge; F P Guengerich
Journal:  Biochemistry       Date:  1997-05-27       Impact factor: 3.162

4.  Differential DNA recognition and cleavage by EcoRI dependent on the dynamic equilibrium between the two forms of the malondialdehyde-deoxyguanosine adduct.

Authors:  Laurie A VanderVeen; Alexandra Druckova; James N Riggins; Jennifer L Sorrells; F Peter Guengerich; Lawrence J Marnett
Journal:  Biochemistry       Date:  2005-04-05       Impact factor: 3.162

5.  4-Hydroperoxy-2-nonenal-induced formation of 1,N2-etheno-2'-deoxyguanosine adducts.

Authors:  Seon Hwa Lee; Jasbir A Arora; Tomoyuki Oe; Ian A Blair
Journal:  Chem Res Toxicol       Date:  2005-04       Impact factor: 3.739

Review 6.  Eukaryotic translesion synthesis DNA polymerases: specificity of structure and function.

Authors:  Satya Prakash; Robert E Johnson; Louise Prakash
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

7.  Mutagenicity of site-specifically located 1,N2-ethenoguanine in Chinese hamster ovary cell chromosomal DNA.

Authors:  S Akasaka; F P Guengerich
Journal:  Chem Res Toxicol       Date:  1999-06       Impact factor: 3.739

8.  Misincorporation of dNTPs opposite 1,N2-ethenoguanine and 5,6,7,9-tetrahydro-7-hydroxy-9-oxoimidazo[1,2-a]purine in oligonucleotides by Escherichia coli polymerases I exo- and II exo-, T7 polymerase exo-, human immunodeficiency virus-1 reverse transcriptase, and rat polymerase beta.

Authors:  S Langouët; M Müller; F P Guengerich
Journal:  Biochemistry       Date:  1997-05-20       Impact factor: 3.162

Review 9.  Etheno DNA-base adducts from endogenous reactive species.

Authors:  J Nair; A Barbin; I Velic; H Bartsch
Journal:  Mutat Res       Date:  1999-03-08       Impact factor: 2.433

10.  Adduct size limits efficient and error-free bypass across bulky N2-guanine DNA lesions by human DNA polymerase eta.

Authors:  Jeong-Yun Choi; F Peter Guengerich
Journal:  J Mol Biol       Date:  2005-09-09       Impact factor: 5.469

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  31 in total

1.  Translesion synthesis past the C8- and N2-deoxyguanosine adducts of the dietary mutagen 2-Amino-3-methylimidazo[4,5-f]quinoline in the NarI recognition sequence by prokaryotic DNA polymerases.

Authors:  James S Stover; Goutam Chowdhury; Hong Zang; F Peter Guengerich; Carmelo J Rizzo
Journal:  Chem Res Toxicol       Date:  2006-11       Impact factor: 3.739

2.  Kinetic analysis of translesion synthesis opposite bulky N2- and O6-alkylguanine DNA adducts by human DNA polymerase REV1.

Authors:  Jeong-Yun Choi; F Peter Guengerich
Journal:  J Biol Chem       Date:  2008-06-30       Impact factor: 5.157

3.  Structure of the 1,N(2)-etheno-2'-deoxyguanosine lesion in the 3'-G(epsilon dG)T-5' sequence opposite a one-base deletion.

Authors:  Ganesh Shanmugam; Ivan D Kozekov; F Peter Guengerich; Carmelo J Rizzo; Michael P Stone
Journal:  Biochemistry       Date:  2010-03-30       Impact factor: 3.162

4.  Translesion synthesis across 1,N6-(2-hydroxy-3-hydroxymethylpropan-1,3-diyl)-2'-deoxyadenosine (1,N6-γ-HMHP-dA) adducts by human and archebacterial DNA polymerases.

Authors:  Srikanth Kotapati; Leena Maddukuri; Susith Wickramaratne; Uthpala Seneviratne; Melissa Goggin; Matthew G Pence; Peter Villalta; F Peter Guengerich; Lawrence Marnett; Natalia Tretyakova
Journal:  J Biol Chem       Date:  2012-09-13       Impact factor: 5.157

Review 5.  Mass spectrometry of structurally modified DNA.

Authors:  Natalia Tretyakova; Peter W Villalta; Srikanth Kotapati
Journal:  Chem Rev       Date:  2013-02-26       Impact factor: 60.622

Review 6.  The endogenous exposome.

Authors:  Jun Nakamura; Esra Mutlu; Vyom Sharma; Leonard Collins; Wanda Bodnar; Rui Yu; Yongquan Lai; Benjamin Moeller; Kun Lu; James Swenberg
Journal:  DNA Repair (Amst)       Date:  2014-04-24

7.  Structure of the 1,N2-ethenodeoxyguanosine adduct opposite cytosine in duplex DNA: Hoogsteen base pairing at pH 5.2.

Authors:  Ganesh Shanmugam; Ivan D Kozekov; F Peter Guengerich; Carmelo J Rizzo; Michael P Stone
Journal:  Chem Res Toxicol       Date:  2008-08-12       Impact factor: 3.739

8.  Pre-Steady-State Kinetic Analysis of Truncated and Full-Length Saccharomyces cerevisiae DNA Polymerase Eta.

Authors:  Jessica A Brown; Likui Zhang; Shanen M Sherrer; John-Stephen Taylor; Peter M J Burgers; Zucai Suo
Journal:  J Nucleic Acids       Date:  2010-07-25

9.  Stability of the human polymerase δ holoenzyme and its implications in lagging strand DNA synthesis.

Authors:  Mark Hedglin; Binod Pandey; Stephen J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-14       Impact factor: 11.205

10.  Transcription processing at 1,N2-ethenoguanine by human RNA polymerase II and bacteriophage T7 RNA polymerase.

Authors:  Alexandra Dimitri; Angela K Goodenough; F Peter Guengerich; Suse Broyde; David A Scicchitano
Journal:  J Mol Biol       Date:  2007-10-30       Impact factor: 5.469

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