Literature DB >> 16779845

Crystal structure of the apo form of D-alanine: D-alanine ligase (Ddl) from Thermus caldophilus: a basis for the substrate-induced conformational changes.

Jun Hyuck Lee1, Young Na, Hye-Eun Song, Dooil Kim, Bo-Hyun Park, Seong-Hwan Rho, Young Jun Im, Mun-Kyoung Kim, Gil Bu Kang, Dae-Sil Lee, Soo Hyun Eom.   

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Year:  2006        PMID： 16779845     DOI： 10.1002/prot.20927

Source DB:  PubMed          Journal:  Proteins        ISSN： 0887-3585


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  8 in total

1.  Structure of the Mycobacterium tuberculosis D-alanine:D-alanine ligase, a target of the antituberculosis drug D-cycloserine.

Authors:  John B Bruning; Ana C Murillo; Ofelia Chacon; Raúl G Barletta; James C Sacchettini
Journal:  Antimicrob Agents Chemother       Date:  2010-10-18       Impact factor: 5.191

2.  Crystallization and preliminary crystallographic analysis of D-alanine-D-alanine ligase from Streptococcus mutans.

Authors:  Yong-Zhi Lu; Yu Sheng; Lan-Fen Li; De-Wei Tang; Xiang-Yu Liu; Xiaojun Zhao; Yu-He Liang; Xiao-Dong Su
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-08-31

3.  Structure of D-alanine-D-alanine ligase from Thermus thermophilus HB8: cumulative conformational change and enzyme-ligand interactions.

Authors:  Yoshiaki Kitamura; Akio Ebihara; Yoshihiro Agari; Akeo Shinkai; Ken Hirotsu; Seiki Kuramitsu
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-09-16

4.  d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations.

Authors:  Jordan L Pederick; Andrew P Thompson; Stephen G Bell; John B Bruning
Journal:  J Biol Chem       Date:  2020-04-25       Impact factor: 5.157

5.  Crystallization and preliminary X-ray analysis of a D-alanyl-D-alanine ligase (EcDdlB) from Escherichia coli.

Authors:  Sarah Batson; Dean Rea; Vilmos Fülöp; David I Roper
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-03-31

6.  PSCDB: a database for protein structural change upon ligand binding.

Authors:  Takayuki Amemiya; Ryotaro Koike; Akinori Kidera; Motonori Ota
Journal:  Nucleic Acids Res       Date:  2011-11-10       Impact factor: 16.971

7.  The Biological Properties and Potential Interacting Proteins of d-Alanyl-d-alanine Ligase A from Mycobacterium tuberculosis.

Authors:  Shufeng Yang; Yuefei Xu; Yan Wang; Feng Ren; Sheng Li; Wenyong Ding; Yufang Ma; Wenli Zhang
Journal:  Molecules       Date:  2018-02-03       Impact factor: 4.411

8.  Burkholderia pseudomallei d-alanine-d-alanine ligase; detailed characterisation and assessment of a potential antibiotic drug target.

Authors:  Laura Díaz-Sáez; Leah S Torrie; Stuart P McElroy; David Gray; William N Hunter
Journal:  FEBS J       Date:  2019-07-16       Impact factor: 5.542
  8 in total

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