Literature DB >> 20383009

Crystallization and preliminary X-ray analysis of a D-alanyl-D-alanine ligase (EcDdlB) from Escherichia coli.

Sarah Batson1, Dean Rea, Vilmos Fülöp, David I Roper.   

Abstract

A recombinant form of Escherichia coli DdlB (EcDdlB) has been prepared and cocrystallized with ADP and D-alanyl-D-alanine to represent the ternary complex of EcDdlB. Furthermore, EcDdlB has been cocrystallized under the same conditions with the ligands ATP and D-alanyl-D-alanine, representing the product-inhibited complex. The crystals belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 53.0, b = 97.6, c = 109.5 A and a = 51.2, b = 97.8, c = 110.1 A, respectively, and both contained two molecules in the asymmetric unit. Complete data sets were collected to 1.5 and 1.4 A resolution, respectively, from single crystals under cryogenic conditions using synchrotron radiation.

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Year:  2010        PMID: 20383009      PMCID: PMC2852331          DOI: 10.1107/S1744309110003970

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  24 in total

1.  Studies on the inhibition of D-alanyl-D-alanine synthetase by the antibiotic D-cycloserine.

Authors:  F C NEUHAUS; J L LYNCH
Journal:  Biochem Biophys Res Commun       Date:  1962-08-07       Impact factor: 3.575

2.  The enzymatic synthesis of D-alanyl-D-alanine. I. Purification and properties of D-alanyl-D-alanine synthetase.

Authors:  F C NEUHAUS
Journal:  J Biol Chem       Date:  1962-03       Impact factor: 5.157

3.  Allosteric inhibition of Staphylococcus aureus D-alanine:D-alanine ligase revealed by crystallographic studies.

Authors:  Shenping Liu; Jeanne S Chang; John T Herberg; Miao-Miao Horng; Paul K Tomich; Alice H Lin; Keith R Marotti
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-02       Impact factor: 11.205

4.  D-alanine:D-alanine ligase: phosphonate and phosphinate intermediates with wild type and the Y216F mutant.

Authors:  C Fan; I S Park; C T Walsh; J R Knox
Journal:  Biochemistry       Date:  1997-03-04       Impact factor: 3.162

5.  Gain of D-alanyl-D-lactate or D-lactyl-D-alanine synthetase activities in three active-site mutants of the Escherichia coli D-alanyl-D-alanine ligase B.

Authors:  I S Park; C H Lin; C T Walsh
Journal:  Biochemistry       Date:  1996-08-13       Impact factor: 3.162

6.  Isolation, cloning, and sequencing of the Salmonella typhimurium ddlA gene with purification and characterization of its product, D-alanine:D-alanine ligase (ADP forming).

Authors:  E Daub; L E Zawadzke; D Botstein; C T Walsh
Journal:  Biochemistry       Date:  1988-05-17       Impact factor: 3.162

7.  Kinetic evidence for the formation of D-alanyl phosphate in the mechanism of D-alanyl-D-alanine ligase.

Authors:  L S Mullins; L E Zawadzke; C T Walsh; F M Raushel
Journal:  J Biol Chem       Date:  1990-06-05       Impact factor: 5.157

8.  Structure of D-alanine-D-alanine ligase from Thermus thermophilus HB8: cumulative conformational change and enzyme-ligand interactions.

Authors:  Yoshiaki Kitamura; Akio Ebihara; Yoshihiro Agari; Akeo Shinkai; Ken Hirotsu; Seiki Kuramitsu
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-09-16

9.  Enzymatic characterization and crystal structure analysis of the D-alanine-D-alanine ligase from Helicobacter pylori.

Authors:  Dalei Wu; Liang Zhang; Yunhua Kong; Jiamu Du; Shuai Chen; Jing Chen; Jianping Ding; Hualiang Jiang; Xu Shen
Journal:  Proteins       Date:  2008-09

10.  Existence of two D-alanine:D-alanine ligases in Escherichia coli: cloning and sequencing of the ddlA gene and purification and characterization of the DdlA and DdlB enzymes.

Authors:  L E Zawadzke; T D Bugg; C T Walsh
Journal:  Biochemistry       Date:  1991-02-12       Impact factor: 3.162

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  1 in total

1.  Inhibition of D-Ala:D-Ala ligase through a phosphorylated form of the antibiotic D-cycloserine.

Authors:  Sarah Batson; Cesira de Chiara; Vita Majce; Adrian J Lloyd; Stanislav Gobec; Dean Rea; Vilmos Fülöp; Christopher W Thoroughgood; Katie J Simmons; Christopher G Dowson; Colin W G Fishwick; Luiz Pedro S de Carvalho; David I Roper
Journal:  Nat Commun       Date:  2017-12-05       Impact factor: 14.919

  1 in total

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