Literature DB >> 16770337

Alternative splicing and RNA selection pressure--evolutionary consequences for eukaryotic genomes.

Yi Xing1, Christopher Lee.   

Abstract

Genome-wide analyses of alternative splicing have established its nearly ubiquitous role in gene regulation in many organisms. Genome sequencing and comparative genomics have made it possible to look in detail at the evolutionary history of specific alternative exons or splice sites, resulting in a flurry of publications in recent years. Here, we consider how alternative splicing has contributed to the evolution of modern genomes, and discuss constraints on evolution associated with alternative splicing that might have important medical implications.

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Year:  2006        PMID: 16770337     DOI: 10.1038/nrg1896

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  129 in total

1.  Species-specific exon loss in human transcriptomes.

Authors:  Jinkai Wang; Zhi-xiang Lu; Collin J Tokheim; Sara E Miller; Yi Xing
Journal:  Mol Biol Evol       Date:  2014-11-14       Impact factor: 16.240

Review 2.  Alternative splicing and evolution: diversification, exon definition and function.

Authors:  Hadas Keren; Galit Lev-Maor; Gil Ast
Journal:  Nat Rev Genet       Date:  2010-04-08       Impact factor: 53.242

3.  A regulator of Dscam mutually exclusive splicing fidelity.

Authors:  Sara Olson; Marco Blanchette; Jung Park; Yiannis Savva; Gene W Yeo; Joanne M Yeakley; Donald C Rio; Brenton R Graveley
Journal:  Nat Struct Mol Biol       Date:  2007-12       Impact factor: 15.369

4.  De novo exon duplication in a new allele of mouse Glra1 (spasmodic).

Authors:  Katherine D Holland; Michelle T Fleming; Susannah Cheek; Jennifer L Moran; David R Beier; Miriam H Meisler
Journal:  Genetics       Date:  2006-10-08       Impact factor: 4.562

5.  The implications of alternative splicing in the ENCODE protein complement.

Authors:  Michael L Tress; Pier Luigi Martelli; Adam Frankish; Gabrielle A Reeves; Jan Jaap Wesselink; Corin Yeats; Páll Isólfur Olason; Mario Albrecht; Hedi Hegyi; Alejandro Giorgetti; Domenico Raimondo; Julien Lagarde; Roman A Laskowski; Gonzalo López; Michael I Sadowski; James D Watson; Piero Fariselli; Ivan Rossi; Alinda Nagy; Wang Kai; Zenia Størling; Massimiliano Orsini; Yassen Assenov; Hagen Blankenburg; Carola Huthmacher; Fidel Ramírez; Andreas Schlicker; France Denoeud; Phil Jones; Samuel Kerrien; Sandra Orchard; Stylianos E Antonarakis; Alexandre Reymond; Ewan Birney; Søren Brunak; Rita Casadio; Roderic Guigo; Jennifer Harrow; Henning Hermjakob; David T Jones; Thomas Lengauer; Christine A Orengo; László Patthy; Janet M Thornton; Anna Tramontano; Alfonso Valencia
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-19       Impact factor: 11.205

6.  Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes.

Authors:  Alexander V Alekseyenko; Namshin Kim; Christopher J Lee
Journal:  RNA       Date:  2007-03-16       Impact factor: 4.942

7.  Between "design" and "bricolage": genetic networks, levels of selection, and adaptive evolution.

Authors:  Adam S Wilkins
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-09       Impact factor: 11.205

Review 8.  The birth of new exons: mechanisms and evolutionary consequences.

Authors:  Rotem Sorek
Journal:  RNA       Date:  2007-08-20       Impact factor: 4.942

9.  Analysis of the canine brain transcriptome with an emphasis on the hypothalamus and cerebral cortex.

Authors:  Meenakshi Roy; Namshin Kim; Kyung Kim; Won-Hyong Chung; Rujira Achawanantakun; Yanni Sun; Robert Wayne
Journal:  Mamm Genome       Date:  2013-11-08       Impact factor: 2.957

10.  Impact of human pathogenic micro-insertions and micro-deletions on post-transcriptional regulation.

Authors:  Xinjun Zhang; Hai Lin; Huiying Zhao; Yangyang Hao; Matthew Mort; David N Cooper; Yaoqi Zhou; Yunlong Liu
Journal:  Hum Mol Genet       Date:  2014-01-16       Impact factor: 6.150

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