Literature DB >> 16766670

New construct approaches for efficient gene silencing in plants.

Hua Yan1, Robert Chretien, Jingsong Ye, Caius M Rommens.   

Abstract

An important component of conventional sense, antisense, and double-strand RNA-based gene silencing constructs is the transcriptional terminator. Here, we show that this regulatory element becomes obsolete when gene fragments are positioned between two oppositely oriented and functionally active promoters. The resulting convergent transcription triggers gene silencing that is at least as effective as unidirectional promoter-to-terminator transcription. In addition to short, variably sized, and nonpolyadenylated RNAs, terminator-free cassette produced rare, longer transcripts that reach into the flanking promoter. These read-through products did not influence the efficacy and expression levels of the neighboring hygromycin phosphotransferase gene. Replacement of gene fragments by promoter-derived sequences further increased the extent of gene silencing. This finding indicates that genomic DNA may be a more efficient target for gene silencing than gene transcripts.

Mesh:

Year:  2006        PMID: 16766670      PMCID: PMC1533924          DOI: 10.1104/pp.106.082271

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  40 in total

1.  Transcriptional silencing and promoter methylation triggered by double-stranded RNA.

Authors:  M F Mette; W Aufsatz; J van der Winden; M A Matzke; A J Matzke
Journal:  EMBO J       Date:  2000-10-02       Impact factor: 11.598

2.  A silenced Plasmodium falciparum var promoter can be activated in vivo through spontaneous deletion of a silencing element in the intron.

Authors:  Laïla Gannoun-Zaki; Amy Jost; Jianbing Mu; Kirk W Deitsch; Thomas E Wellems
Journal:  Eukaryot Cell       Date:  2005-02

3.  A SNF2-like protein facilitates dynamic control of DNA methylation.

Authors:  Tatsuo Kanno; Werner Aufsatz; Estelle Jaligot; Michael Florian Mette; Marjori Matzke; Antonius J M Matzke
Journal:  EMBO Rep       Date:  2005-07       Impact factor: 8.807

4.  Compilation of mRNA polyadenylation signals in Arabidopsis revealed a new signal element and potential secondary structures.

Authors:  Johnny C Loke; Eric A Stahlberg; David G Strenski; Brian J Haas; Paul Chris Wood; Qingshun Quinn Li
Journal:  Plant Physiol       Date:  2005-06-17       Impact factor: 8.340

5.  Isolation and sequence analysis of a cDNA clone encoding a subunit of the ADP-glucose pyrophosphorylase of potato tuber amyloplasts.

Authors:  P du Jardin; A Berhin
Journal:  Plant Mol Biol       Date:  1991-02       Impact factor: 4.076

6.  Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation.

Authors:  A M Lindroth; X Cao; J P Jackson; D Zilberman; C M McCallum; S Henikoff; S E Jacobsen
Journal:  Science       Date:  2001-05-10       Impact factor: 47.728

7.  Inverted-repeat DNA: a new gene-silencing tool for seed lipid modification.

Authors:  S Singh; A Green; P Stoutjesdijk; Q Liu
Journal:  Biochem Soc Trans       Date:  2000-12       Impact factor: 5.407

8.  Crop improvement through modification of the plant's own genome.

Authors:  Caius M Rommens; Jaime M Humara; Jingsong Ye; Hua Yan; Craig Richael; Lynda Zhang; Rachel Perry; Kathleen Swords
Journal:  Plant Physiol       Date:  2004-05-07       Impact factor: 8.340

9.  Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation.

Authors:  Tatsuo Kanno; M Florian Mette; David P Kreil; Werner Aufsatz; Marjori Matzke; Antonius J M Matzke
Journal:  Curr Biol       Date:  2004-05-04       Impact factor: 10.834

10.  Expressing functional siRNAs in mammalian cells using convergent transcription.

Authors:  Nham Tran; Murray J Cairns; Ian W Dawes; Greg M Arndt
Journal:  BMC Biotechnol       Date:  2003-11-06       Impact factor: 2.563

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  10 in total

1.  Overexpression of the wild potato eIF4E-1 variant Eva1 elicits Potato virus Y resistance in plants silenced for native eIF4E-1.

Authors:  Hui Duan; Craig Richael; Caius M Rommens
Journal:  Transgenic Res       Date:  2011-12-07       Impact factor: 2.788

2.  Cytokinin vectors mediate marker-free and backbone-free plant transformation.

Authors:  Craig M Richael; Marina Kalyaeva; Robert C Chretien; Hua Yan; Sathya Adimulam; Artesia Stivison; J Troy Weeks; Caius M Rommens
Journal:  Transgenic Res       Date:  2008-03-05       Impact factor: 2.788

3.  Development of an in planta method for transformation of alfalfa (Medicago sativa).

Authors:  J Troy Weeks; Jingsong Ye; Caius M Rommens
Journal:  Transgenic Res       Date:  2007-09-13       Impact factor: 2.788

4.  RNA silencing mediated by direct repeats in maize: a potential tool for functional genomics.

Authors:  Xiuping Xu; Dengyun Zhu; Qian Zhao; Guangming Ao; Chonglie Ma; Jingjuan Yu
Journal:  Mol Biotechnol       Date:  2008-11-22       Impact factor: 2.695

5.  Transgene constructs lacking transcription termination signal induce efficient silencing of endogenous targets in Arabidopsis.

Authors:  Scott J Nicholson; Vibha Srivastava
Journal:  Mol Genet Genomics       Date:  2009-07-01       Impact factor: 3.291

6.  Improperly terminated, unpolyadenylated mRNA of sense transgenes is targeted by RDR6-mediated RNA silencing in Arabidopsis.

Authors:  Zhenghua Luo; Zhixiang Chen
Journal:  Plant Cell       Date:  2007-03-23       Impact factor: 11.277

7.  Increased rates of gene-editing events using a simplified RNAi configuration designed to reduce gene silencing.

Authors:  Manoj Kumar; Pankaj Kumar Tripathi; Dana Ayzenshtat; Adar Marko; Zohar Forotan; Samuel E Bocobza
Journal:  Plant Cell Rep       Date:  2022-07-18       Impact factor: 4.964

8.  Low-acrylamide French fries and potato chips.

Authors:  Caius M Rommens; Hua Yan; Kathy Swords; Craig Richael; Jingsong Ye
Journal:  Plant Biotechnol J       Date:  2008-07-23       Impact factor: 9.803

9.  Single tube, high throughput cloning of inverted repeat constructs for double-stranded RNA expression.

Authors:  Brian Hauge; Christopher Oggero; Nicole Nguyen; Changlin Fu; Fenggao Dong
Journal:  PLoS One       Date:  2009-09-28       Impact factor: 3.240

10.  Pervasive read-through transcription of T-DNAs is frequent in tobacco BY-2 cells and can effectively induce silencing.

Authors:  Vojtěch Čermák; Lukáš Fischer
Journal:  BMC Plant Biol       Date:  2018-10-22       Impact factor: 4.215

  10 in total

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