Literature DB >> 16766353

GENTEX, a general multiscale model for in vivo tissue exchanges and intraorgan metabolism.

James B Bassingthwaighte1, Gary M Raymond, James D Ploger, Lisa M Schwartz, Thomas R Bukowski.   

Abstract

Endothelial cells lining myocardial capillaries not only impede transport of blood solutes to the contractile cells, but also take up and release substrates, competing with myocytes. Solutes permeating this barrier exhibit concentration gradients along the capillary. This paper introduces a generic model, GENTEX, to characterize blood-tissue exchanges. GENTEX is a whole organ model of the vascular network providing intraorgan flow heterogeneity and accounts for substrate transmembrane transport, binding and metabolism in erythrocytes, plasma, endothelial cells, interstitial space and cardiomyocytes. The model is tested here for the analysis of multiple tracer indicator dilution data on purine nucleoside metabolism in the isolated Krebs-Henseleit-perfused non-working hearts. It has been also used for analysing NMR contrast data for regional myocardial flows and for positron emission tomographic studies of cardiac receptor kinetics. The facilitating transporters, binding sites and enzymatic reactions are nonlinear elements and allow competition between substrates and a reaction sequence of up to five substrate-product reactions in a metabolic network. Strategies for application start with experiment designs incorporating inert reference tracers. For the estimation of endothelial and sarcolemmal permeability-surface area products and metabolism of the substrates and products, model solutions were optimized to fit the data from pairs of tracer injections (of either inosine or adenosine, plus the reference tracers) injected under the same circumstances a few minutes later. The results provide a self-consistent description of nucleoside metabolism in a beating well-perfused rabbit heart, and illustrate the power of the model to fit multiple datasets simultaneously.

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Year:  2006        PMID: 16766353      PMCID: PMC4169204          DOI: 10.1098/rsta.2006.1779

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  33 in total

1.  Computationally efficient algorithms for convection-permeation-diffusion models for blood-tissue exchange.

Authors:  J B Bassingthwaighte; I S Chan; C Y Wang
Journal:  Ann Biomed Eng       Date:  1992       Impact factor: 3.934

2.  Capillary endothelial transport of uric acid in guinea pig heart.

Authors:  K Kroll; T R Bukowski; L M Schwartz; D Knoepfler; J B Bassingthwaighte
Journal:  Am J Physiol       Date:  1992-02

3.  A new multi-scale simulation model of the circulation: from cells to system.

Authors:  Eun Bo Shim; Chae Hun Leem; Yasuyuki Abe; Akinori Noma
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2006-06-15       Impact factor: 4.226

4.  The number and distribution of capillaries in muscles with calculations of the oxygen pressure head necessary for supplying the tissue.

Authors:  A Krogh
Journal:  J Physiol       Date:  1919-05-20       Impact factor: 5.182

5.  Blood-tissue exchange via transport and transformation by capillary endothelial cells.

Authors:  J B Bassingthwaighte; C Y Wang; I S Chan
Journal:  Circ Res       Date:  1989-10       Impact factor: 17.367

6.  A concurrent flow model for extraction during transcapillary passage.

Authors:  J B Bassingthwaighte
Journal:  Circ Res       Date:  1974-09       Impact factor: 17.367

7.  A vascular transport operator.

Authors:  R B King; A Deussen; G M Raymond; J B Bassingthwaighte
Journal:  Am J Physiol       Date:  1993-12

8.  Identification of distinct luminal domains for macromolecules, erythrocytes, and leukocytes within mammalian capillaries.

Authors:  H Vink; B R Duling
Journal:  Circ Res       Date:  1996-09       Impact factor: 17.367

9.  Cardiac endothelial transport and metabolism of adenosine and inosine.

Authors:  L M Schwartz; T R Bukowski; J H Revkin; J B Bassingthwaighte
Journal:  Am J Physiol       Date:  1999-09

10.  Xanthine oxidase is not a source of free radicals in the ischemic rabbit heart.

Authors:  J M Downey; T Miura; L J Eddy; D E Chambers; T Mellert; D J Hearse; D M Yellon
Journal:  J Mol Cell Cardiol       Date:  1987-11       Impact factor: 5.000

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  14 in total

Review 1.  Quantitative and qualitative analysis and interpretation of CT perfusion imaging.

Authors:  Carolina Valdiviezo; Marietta Ambrose; Vishal Mehra; Albert C Lardo; Joao A C Lima; Richard T George
Journal:  J Nucl Cardiol       Date:  2010-12       Impact factor: 5.952

2.  SBML and CellML translation in antimony and JSim.

Authors:  Lucian P Smith; Erik Butterworth; James B Bassingthwaighte; Herbert M Sauro
Journal:  Bioinformatics       Date:  2013-11-08       Impact factor: 6.937

3.  Linking cellular energetics to local flow regulation in the heart.

Authors:  James B Bassingthwaighte
Journal:  Ann N Y Acad Sci       Date:  2008-03       Impact factor: 5.691

4.  Development of appropriate equations for physiologically based pharmacokinetic modeling of permeability-limited and flow-limited transport.

Authors:  Matthew D Thompson; Daniel A Beard
Journal:  J Pharmacokinet Pharmacodyn       Date:  2011-05-17       Impact factor: 2.745

5.  Regulation of the glucose supply from capillary to tissue examined by developing a capillary model.

Authors:  Akitoshi Maeda; Yukiko Himeno; Masayuki Ikebuchi; Akinori Noma; Akira Amano
Journal:  J Physiol Sci       Date:  2017-04-17       Impact factor: 2.781

6.  Comparison of blood flow models and acquisitions for quantitative myocardial perfusion estimation from dynamic CT.

Authors:  Michael Bindschadler; Dimple Modgil; Kelley R Branch; Patrick J La Riviere; Adam M Alessio
Journal:  Phys Med Biol       Date:  2014-03-10       Impact factor: 3.609

7.  Multiscale modeling of metabolism, flows, and exchanges in heterogeneous organs.

Authors:  James B Bassingthwaighte; Gary M Raymond; Erik Butterworth; Adam Alessio; James H Caldwell
Journal:  Ann N Y Acad Sci       Date:  2010-02       Impact factor: 5.691

Review 8.  Microcirculation and the physiome projects.

Authors:  James B Bassingthwaighte
Journal:  Microcirculation       Date:  2008-11       Impact factor: 2.628

9.  A metabolic model of human erythrocytes: practical application of the E-Cell Simulation Environment.

Authors:  Ayako Yachie-Kinoshita; Taiko Nishino; Hanae Shimo; Makoto Suematsu; Masaru Tomita
Journal:  J Biomed Biotechnol       Date:  2010-06-28

10.  Predictive Modeling and Integrative Physiology: The Physiome Projects.

Authors:  James B Bassingthwaighte
Journal:  Open Pacing Electrophysiol Ther J       Date:  2010
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