Literature DB >> 16765384

An integrated agent-mathematical model of the effect of intercellular signalling via the epidermal growth factor receptor on cell proliferation.

Dawn Walker1, Steven Wood, Jennifer Southgate, Mike Holcombe, Rodney Smallwood.   

Abstract

We have previously developed Epitheliome, a software agent representation of the growth and repair characteristics of epithelial cell populations, where cell behaviour is governed by a number of simple rules. In this paper, we describe how this model has been extended to incorporate an example of a molecular 'mechanism' behind a rule-in this case, how signalling by both endogenous and exogenous ligands of the epidermal growth factor receptor (EGFR) can impact on the proliferation of cell agents. We have developed a mathematical model representing release of endogenous ligand by cells, three-dimensional diffusion of the secreted molecules through a volume of cell culture medium, ligand-receptor binding, and bound receptor internalization and trafficking. Information relating to quantities of molecular species associated with each cell agent is frequently exchanged between the agent and signalling models, and the ratio of bound to free receptors determines cell cycle progression and hence the proliferative behaviour of the cell agents. We have applied this integrated model to examine the effect of plating density on tissue growth via autocrine/paracrine signalling. This predicts that cell growth is dependent on the concentration of exogenous ligand, but where this is limited, then growth becomes dependent on cell density and the availability of endogenous ligand. We have further modified the calcium concentration of the medium to modulate the formation of intercellular bonds between cells and shown that the increased propensity for cells to form colonies in physiological calcium does not result in significantly different patterns of receptor occupancy. In conclusion, our approach demonstrates that by combining agent-based and mathematical modelling paradigms, it is possible to probe the complex feedback relationship between the behaviour of individual cells and their interaction with one another and their environment.

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Year:  2006        PMID: 16765384     DOI: 10.1016/j.jtbi.2006.04.020

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  16 in total

1.  The modulatory effect of cell–cell contact on the tumourigenic potential of pre-malignant epithelial cells: a computational exploration.

Authors:  D C Walker; J Southgate
Journal:  J R Soc Interface       Date:  2012-11-08       Impact factor: 4.118

2.  Immature oxidative stress management as a unifying principle in the pathogenesis of necrotizing enterocolitis: insights from an agent-based model.

Authors:  Moses Kim; Scott Christley; John C Alverdy; Donald Liu; Gary An
Journal:  Surg Infect (Larchmt)       Date:  2012-01-04       Impact factor: 2.150

Review 3.  Normal morphogenesis of epithelial tissues and progression of epithelial tumors.

Authors:  Chun-Chao Wang; Leen Jamal; Kevin A Janes
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2011-09-02

4.  Agent-Based Modeling of Complex Molecular Systems.

Authors:  Mike Holcombe; Eva Qwarnstrom
Journal:  Methods Mol Biol       Date:  2022

5.  Systems biology of embryogenesis.

Authors:  Lucas B Edelman; Sriram Chandrasekaran; Nathan D Price
Journal:  Reprod Fertil Dev       Date:  2010       Impact factor: 2.311

6.  Integration of TGF-β- and EGFR-based signaling pathways using an agent-based model of epithelial restitution.

Authors:  Jordan R Stern; Scott Christley; Olga Zaborina; John C Alverdy; Gary An
Journal:  Wound Repair Regen       Date:  2012-10-30       Impact factor: 3.617

7.  Differential regulation of growth-promoting signalling pathways by E-cadherin.

Authors:  Nikolaos T Georgopoulos; Lisa A Kirkwood; Dawn C Walker; Jennifer Southgate
Journal:  PLoS One       Date:  2010-10-26       Impact factor: 3.240

8.  From pathway to population--a multiscale model of juxtacrine EGFR-MAPK signalling.

Authors:  D C Walker; N T Georgopoulos; J Southgate
Journal:  BMC Syst Biol       Date:  2008-11-26

9.  A computational approach to understand in vitro alveolar morphogenesis.

Authors:  Sean H J Kim; Wei Yu; Keith Mostov; Michael A Matthay; C Anthony Hunt
Journal:  PLoS One       Date:  2009-03-13       Impact factor: 3.240

10.  Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network.

Authors:  Clemens Kühn; Christoph Wierling; Alexander Kühn; Edda Klipp; Georgia Panopoulou; Hans Lehrach; Albert J Poustka
Journal:  BMC Syst Biol       Date:  2009-08-23
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