Literature DB >> 16759230

Surface density of cellobiohydrolase on crystalline celluloses. A critical parameter to evaluate enzymatic kinetics at a solid-liquid interface.

Kiyohiko Igarashi1, Masahisa Wada, Ritsuko Hori, Masahiro Samejima.   

Abstract

The enzymatic kinetics of glycoside hydrolase family 7 cellobiohydrolase (Cel7A) towards highly crystalline celluloses at the solid-liquid interface was evaluated by applying the novel concept of surface density (rho) of the enzyme, which is defined as the amount of adsorbed enzyme divided by the maximum amount of adsorbed enzyme. When the adsorption levels of Trichoderma viride Cel7A on cellulose I(alpha) from Cladophora and cellulose I(beta) from Halocynthia were compared, the maximum adsorption of the enzyme on cellulose I(beta) was approximately 1.5 times higher than that on cellulose I(alpha), although the rate of cellobiose production from cellulose I(beta) was lower than that from cellulose I(alpha). This indicates that the specific activity (k) of Cel7A adsorbed on cellulose I(alpha) is higher than that of Cel7A adsorbed on cellulose I(beta). When k was plotted versus rho, a dramatic decrease of the specific activity was observed with the increase of surface density (rho-value), suggesting that overcrowding of enzyme molecules on a cellulose surface lowers their activity. An apparent difference of the specific activity was observed between crystalline polymorphs, i.e. the specific activity for cellulose I(alpha) was almost twice that for cellulose I(beta). When cellulose I(alpha) was converted to cellulose I(beta) by hydrothermal treatment, the specific activity of Cel7A decreased and became similar to that of native cellulose I(beta) at the same rho-value. These results indicate that the hydrolytic activity (rate) of bound Cel7A depends on the nature of the crystalline cellulose polymorph, and an analysis that takes surface density into account is an effective means to evaluate cellulase kinetics at a solid-liquid interface.

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Year:  2006        PMID: 16759230     DOI: 10.1111/j.1742-4658.2006.05299.x

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  15 in total

1.  Guide to video recording of structure dynamics and dynamic processes of proteins by high-speed atomic force microscopy.

Authors:  Takayuki Uchihashi; Noriyuki Kodera; Toshio Ando
Journal:  Nat Protoc       Date:  2012-05-24       Impact factor: 13.491

2.  Binding and movement of individual Cel7A cellobiohydrolases on crystalline cellulose surfaces revealed by single-molecule fluorescence imaging.

Authors:  Jaemyeong Jung; Anurag Sethi; Tiziano Gaiotto; Jason J Han; Tina Jeoh; Sandrasegaram Gnanakaran; Peter M Goodwin
Journal:  J Biol Chem       Date:  2013-07-01       Impact factor: 5.157

3.  Systems-level modeling with molecular resolution elucidates the rate-limiting mechanisms of cellulose decomposition by cellobiohydrolases.

Authors:  Barry Z Shang; Rakwoo Chang; Jhih-Wei Chu
Journal:  J Biol Chem       Date:  2013-08-15       Impact factor: 5.157

4.  Single-molecule imaging analysis of elementary reaction steps of Trichoderma reesei cellobiohydrolase I (Cel7A) hydrolyzing crystalline cellulose Iα and IIII.

Authors:  Yusuke Shibafuji; Akihiko Nakamura; Takayuki Uchihashi; Naohisa Sugimoto; Shingo Fukuda; Hiroki Watanabe; Masahiro Samejima; Toshio Ando; Hiroyuki Noji; Anu Koivula; Kiyohiko Igarashi; Ryota Iino
Journal:  J Biol Chem       Date:  2014-04-01       Impact factor: 5.157

5.  Origin of initial burst in activity for Trichoderma reesei endo-glucanases hydrolyzing insoluble cellulose.

Authors:  Leigh Murphy; Nicolaj Cruys-Bagger; Heidi Delcomyn Damgaard; Martin J Baumann; Søren Nymand Olsen; Kim Borch; Søren Flensted Lassen; Matt Sweeney; Hirosuke Tatsumi; Peter Westh
Journal:  J Biol Chem       Date:  2011-11-22       Impact factor: 5.157

6.  Bacterial production of free fatty acids from freshwater macroalgal cellulose.

Authors:  Spencer W Hoover; Wesley D Marner; Amy K Brownson; Rebecca M Lennen; Tyler M Wittkopp; Jun Yoshitani; Shahrizim Zulkifly; Linda E Graham; Sheena D Chaston; Katherine D McMahon; Brian F Pfleger
Journal:  Appl Microbiol Biotechnol       Date:  2011-06-04       Impact factor: 4.813

7.  Kinetics of cellobiohydrolase (Cel7A) variants with lowered substrate affinity.

Authors:  Jeppe Kari; Johan Olsen; Kim Borch; Nicolaj Cruys-Bagger; Kenneth Jensen; Peter Westh
Journal:  J Biol Chem       Date:  2014-09-30       Impact factor: 5.157

8.  Effect of pH and temperature on the global compactness, structure, and activity of cellobiohydrolase Cel7A from Trichoderma harzianum.

Authors:  Francieli Colussi; Wanius Garcia; Flávio Rodolfo Rosseto; Bruno Luan Soares de Mello; Mário de Oliveira Neto; Igor Polikarpov
Journal:  Eur Biophys J       Date:  2011-11-03       Impact factor: 1.733

9.  The tryptophan residue at the active site tunnel entrance of Trichoderma reesei cellobiohydrolase Cel7A is important for initiation of degradation of crystalline cellulose.

Authors:  Akihiko Nakamura; Takeshi Tsukada; Sanna Auer; Tadaomi Furuta; Masahisa Wada; Anu Koivula; Kiyohiko Igarashi; Masahiro Samejima
Journal:  J Biol Chem       Date:  2013-03-26       Impact factor: 5.157

10.  Characterization of an endoglucanase belonging to a new subfamily of glycoside hydrolase family 45 of the basidiomycete Phanerochaete chrysosporium.

Authors:  Kiyohiko Igarashi; Takuya Ishida; Chiaki Hori; Masahiro Samejima
Journal:  Appl Environ Microbiol       Date:  2008-08-01       Impact factor: 4.792

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