Literature DB >> 16753153

Mass spectrometry of hydrogen/deuterium exchange in 70S ribosomal proteins from E. coli.

Tatsuya Yamamoto1, Shunsuke Izumi, Kunihiko Gekko.   

Abstract

The 70S ribosome from Escherichia coli is a supermacro complex (MW: 2.7MDa) comprising three RNA molecules and more than 50 proteins. We have for the first time successfully analyzed the flexibility of 70S ribosomal proteins in solution by detecting the hydrogen/deuterium exchange with mass spectrometry. Based on the deuterium incorporation map of the X-ray structure obtained at the time of each exchange, we demonstrate the structure-flexibility-function relationship of ribosome focusing on the deuterium incorporation of the proteins binding ligands (tRNA, mRNA, and elongation factor) and the relation with structural assembly processes.

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Year:  2006        PMID: 16753153     DOI: 10.1016/j.febslet.2006.05.049

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  11 in total

1.  Evidence for ATP-dependent structural rearrangement of nuclease catalytic site in DNA mismatch repair endonuclease MutL.

Authors:  Tatsuya Yamamoto; Hitoshi Iino; Kwang Kim; Seiki Kuramitsu; Kenji Fukui
Journal:  J Biol Chem       Date:  2011-09-26       Impact factor: 5.157

Review 2.  Biophysical studies of bacterial ribosome assembly.

Authors:  James R Williamson
Journal:  Curr Opin Struct Biol       Date:  2008-06-07       Impact factor: 6.809

3.  Mg2+ dependence of 70 S ribosomal protein flexibility revealed by hydrogen/deuterium exchange and mass spectrometry.

Authors:  Tatsuya Yamamoto; Yoshihiro Shimizu; Takuya Ueda; Yoshitsugu Shiro
Journal:  J Biol Chem       Date:  2009-12-18       Impact factor: 5.157

4.  Escherichia coli translation strategies differ across carbon, nitrogen and phosphorus limitation conditions.

Authors:  Sophia Hsin-Jung Li; Zhiyuan Li; Junyoung O Park; Christopher G King; Joshua D Rabinowitz; Ned S Wingreen; Zemer Gitai
Journal:  Nat Microbiol       Date:  2018-07-23       Impact factor: 17.745

5.  Limited proteolysis analysis of the ribosome is affected by subunit association.

Authors:  Daisy-Malloy Hamburg; Moo-Jin Suh; Patrick A Limbach
Journal:  Biopolymers       Date:  2009-06       Impact factor: 2.505

6.  Uniting Native Capillary Electrophoresis and Multistage Ultraviolet Photodissociation Mass Spectrometry for Online Separation and Characterization of Escherichia coli Ribosomal Proteins and Protein Complexes.

Authors:  M Rachel Mehaffey; Qiangwei Xia; Jennifer S Brodbelt
Journal:  Anal Chem       Date:  2020-11-06       Impact factor: 6.986

Review 7.  Characterizing Protein Structure, Dynamics and Conformation in Lyophilized Solids.

Authors:  Balakrishnan S Moorthy; Lavanya K Iyer; Elizabeth M Topp
Journal:  Curr Pharm Des       Date:  2015       Impact factor: 3.116

8.  Developing limited proteolysis and mass spectrometry for the characterization of ribosome topography.

Authors:  Moo-Jin Suh; Soheil Pourshahian; Patrick A Limbach
Journal:  J Am Soc Mass Spectrom       Date:  2007-04-06       Impact factor: 3.109

9.  Folding and assembly of large macromolecular complexes monitored by hydrogen-deuterium exchange and mass spectrometry.

Authors:  Bohumila Suchanova; Roman Tuma
Journal:  Microb Cell Fact       Date:  2008-04-04       Impact factor: 5.328

10.  Core flexibility of a truncated metazoan mitochondrial tRNA.

Authors:  Ashley A Frazer-Abel; Paul J Hagerman
Journal:  Nucleic Acids Res       Date:  2008-08-21       Impact factor: 16.971

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