Literature DB >> 16750836

A kinetic model of oxygen regulation of cytochrome production in Escherichia coli.

Bradford E Peercy1, Steven J Cox, Sagit Shalel-Levanon, Ka-Yiu San, George Bennett.   

Abstract

Recent experimental work has identified the principal components arrayed by Escherichia coli in its sensing of, and response to, varying levels of oxygen. This apparatus may be leveraged/modified by the metabolic engineer to identify nonuniform oxygen and glucose regimens that deliver better yields than their uniform counterparts. Toward this end we build and analyse a mathematical model that captures the role played by oxygen in the regulation of cytochrome production in E. coli.

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Year:  2006        PMID: 16750836     DOI: 10.1016/j.jtbi.2006.04.006

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  6 in total

Review 1.  Fe-S proteins that regulate gene expression.

Authors:  Erin L Mettert; Patricia J Kiley
Journal:  Biochim Biophys Acta       Date:  2014-11-20

Review 2.  Strategies for manipulation of oxygen utilization by the electron transfer chain in microbes for metabolic engineering purposes.

Authors:  George N Bennett; Ka-Yiu San
Journal:  J Ind Microbiol Biotechnol       Date:  2016-10-31       Impact factor: 3.346

3.  Dynamic metabolic flux analysis demonstrated on cultures where the limiting substrate is changed from carbon to nitrogen and vice versa.

Authors:  Gaspard Lequeux; Joeri Beauprez; Jo Maertens; Ellen Van Horen; Wim Soetaert; Erick Vandamme; Peter A Vanrolleghem
Journal:  J Biomed Biotechnol       Date:  2010-08-23

4.  Agent-based modeling of oxygen-responsive transcription factors in Escherichia coli.

Authors:  Hao Bai; Matthew D Rolfe; Wenjing Jia; Simon Coakley; Robert K Poole; Jeffrey Green; Mike Holcombe
Journal:  PLoS Comput Biol       Date:  2014-04-24       Impact factor: 4.475

5.  Basic regulatory principles of Escherichia coli's electron transport chain for varying oxygen conditions.

Authors:  Sebastian G Henkel; Alexander Ter Beek; Sonja Steinsiek; Stefan Stagge; Katja Bettenbrock; M Joost Teixeira de Mattos; Thomas Sauter; Oliver Sawodny; Michael Ederer
Journal:  PLoS One       Date:  2014-09-30       Impact factor: 3.240

6.  A mathematical model of metabolism and regulation provides a systems-level view of how Escherichia coli responds to oxygen.

Authors:  Michael Ederer; Sonja Steinsiek; Stefan Stagge; Matthew D Rolfe; Alexander Ter Beek; David Knies; M Joost Teixeira de Mattos; Thomas Sauter; Jeffrey Green; Robert K Poole; Katja Bettenbrock; Oliver Sawodny
Journal:  Front Microbiol       Date:  2014-03-27       Impact factor: 5.640

  6 in total

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