Literature DB >> 16741231

Use of targetrons to disrupt essential and nonessential genes in Staphylococcus aureus reveals temperature sensitivity of Ll.LtrB group II intron splicing.

Jun Yao1, Jin Zhong, Yuan Fang, Edward Geisinger, Richard P Novick, Alan M Lambowitz.   

Abstract

We show that a targetron based on the Lactococcus lactis Ll.LtrB group II intron can be used for efficient chromosomal gene disruption in the human pathogen Staphylococcus aureus. Targetrons expressed from derivatives of vector pCN37, which uses a cadmium-inducible promoter, or pCN39, a derivative of pCN37 with a temperature-sensitive replicon, gave site-specific disruptants of the hsa and seb genes in 37%-100% of plated colonies without selection. To disrupt hsa, an essential gene, we used a group II intron that integrates in the sense orientation relative to target gene transcription and thus could be removed by RNA splicing, enabling the production of functional HSa protein. We show that because splicing of the Ll.LtrB intron by the intron-encoded protein is temperature-sensitive, this method yields a conditional hsa disruptant that grows at 32 degrees C but not 43 degrees C. The temperature sensitivity of the splicing reaction suggests a general means of obtaining one-step conditional disruptions in any organism. In nature, temperature sensitivity of group II intron splicing could limit the temperature range of an organism containing a group II intron inserted in an essential gene.

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Year:  2006        PMID: 16741231      PMCID: PMC1484445          DOI: 10.1261/rna.68706

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  29 in total

1.  Group II introns as controllable gene targeting vectors for genetic manipulation of bacteria.

Authors:  M Karberg; H Guo; J Zhong; R Coon; J Perutka; A M Lambowitz
Journal:  Nat Biotechnol       Date:  2001-12       Impact factor: 54.908

2.  Characterization of the C-terminal DNA-binding/DNA endonuclease region of a group II intron-encoded protein.

Authors:  Joseph San Filippo; Alan M Lambowitz
Journal:  J Mol Biol       Date:  2002-12-13       Impact factor: 5.469

3.  A group II intron-encoded maturase functions preferentially in cis and requires both the reverse transcriptase and X domains to promote RNA splicing.

Authors:  Xiaoxia Cui; Manabu Matsuura; Qin Wang; Hongwen Ma; Alan M Lambowitz
Journal:  J Mol Biol       Date:  2004-07-02       Impact factor: 5.469

4.  Mobility of yeast mitochondrial group II introns: engineering a new site specificity and retrohoming via full reverse splicing.

Authors:  R Eskes; J Yang; A M Lambowitz; P S Perlman
Journal:  Cell       Date:  1997-03-21       Impact factor: 41.582

5.  Group II introns designed to insert into therapeutically relevant DNA target sites in human cells.

Authors:  H Guo; M Karberg; M Long; J P Jones; B Sullenger; A M Lambowitz
Journal:  Science       Date:  2000-07-21       Impact factor: 47.728

6.  The toxic shock syndrome exotoxin structural gene is not detectably transmitted by a prophage.

Authors:  B N Kreiswirth; S Löfdahl; M J Betley; M O'Reilly; P M Schlievert; M S Bergdoll; R P Novick
Journal:  Nature       Date:  1983 Oct 20-26       Impact factor: 49.962

7.  Expression of an antisense hla fragment in Staphylococcus aureus reduces alpha-toxin production in vitro and attenuates lethal activity in a murine model.

Authors:  D S Kernodle; R K Voladri; B E Menzies; C C Hager; K M Edwards
Journal:  Infect Immun       Date:  1997-01       Impact factor: 3.441

8.  Improved method for electroporation of Staphylococcus aureus.

Authors:  S Schenk; R A Laddaga
Journal:  FEMS Microbiol Lett       Date:  1992-07-01       Impact factor: 2.742

9.  Chromosomal locus for staphylococcal enterotoxin B.

Authors:  W M Shafer; J J Iandolo
Journal:  Infect Immun       Date:  1978-04       Impact factor: 3.441

10.  Novel cassette-based shuttle vector system for gram-positive bacteria.

Authors:  Emmanuelle Charpentier; Ana I Anton; Peter Barry; Berenice Alfonso; Yuan Fang; Richard P Novick
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

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  59 in total

1.  Restriction for gene insertion within the Lactococcus lactis Ll.LtrB group II intron.

Authors:  Isabelle Plante; Benoit Cousineau
Journal:  RNA       Date:  2006-09-14       Impact factor: 4.942

2.  Marker removal in staphylococci via Cre recombinase and different lox sites.

Authors:  Martina Leibig; Bernhard Krismer; Martina Kolb; Alexandra Friede; Friedrich Götz; Ralph Bertram
Journal:  Appl Environ Microbiol       Date:  2007-12-28       Impact factor: 4.792

3.  CodY-mediated regulation of the Staphylococcus aureus Agr system integrates nutritional and population density signals.

Authors:  Agnès Roux; Daniel A Todd; Jose V Velázquez; Nadja B Cech; Abraham L Sonenshein
Journal:  J Bacteriol       Date:  2014-01-03       Impact factor: 3.490

4.  Two large, related, cryptic plasmids from geographically distinct isolates of Sulfobacillus thermotolerans.

Authors:  S M Deane; D E Rawlings
Journal:  Appl Environ Microbiol       Date:  2011-09-16       Impact factor: 4.792

5.  Examination of the Staphylococcus aureus nitric oxide reductase (saNOR) reveals its contribution to modulating intracellular NO levels and cellular respiration.

Authors:  A M Lewis; S S Matzdorf; J L Endres; I H Windham; K W Bayles; K C Rice
Journal:  Mol Microbiol       Date:  2015-03-16       Impact factor: 3.501

Review 6.  Group II Intron RNPs and Reverse Transcriptases: From Retroelements to Research Tools.

Authors:  Marlene Belfort; Alan M Lambowitz
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-04-01       Impact factor: 10.005

7.  New range of vectors with a stringent 5-fluoroorotic acid-based counterselection system for generating mutants by allelic replacement in Staphylococcus aureus.

Authors:  Peter Redder; Patrick Linder
Journal:  Appl Environ Microbiol       Date:  2012-03-23       Impact factor: 4.792

8.  Characterization of Clostridium perfringens TpeL toxin gene carriage, production, cytotoxic contributions, and trypsin sensitivity.

Authors:  Jianming Chen; Bruce A McClane
Journal:  Infect Immun       Date:  2015-03-30       Impact factor: 3.441

9.  Regulation of hemolysin expression and virulence of Staphylococcus aureus by a serine/threonine kinase and phosphatase.

Authors:  Kellie Burnside; Annalisa Lembo; Melissa de Los Reyes; Anton Iliuk; Nguyen-Thao Binhtran; James E Connelly; Wan-Jung Lin; Byron Z Schmidt; Anthony R Richardson; Ferric C Fang; Weiguo Andy Tao; Lakshmi Rajagopal
Journal:  PLoS One       Date:  2010-06-11       Impact factor: 3.240

10.  Targeted gene inactivation in Clostridium phytofermentans shows that cellulose degradation requires the family 9 hydrolase Cphy3367.

Authors:  Andrew C Tolonen; Amanda C Chilaka; George M Church
Journal:  Mol Microbiol       Date:  2009-09-22       Impact factor: 3.501

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