Literature DB >> 16739983

Probing latent biomarker signatures and in vivo pathway activity in experimental disease states via statistical total correlation spectroscopy (STOCSY) of biofluids: application to HgCl2 toxicity.

E Holmes1, O Cloarec, J K Nicholson.   

Abstract

A new multivariate statistical approach, based on the novel combination of projection on latent structure analysis with an inbuilt orthogonal filter (OPLS-DA) coupled with a spectroscopic correlation method statistical total correlation spectroscopy (STOCSY), was used to characterize the in vivo metabolic pathway perturbations of a model renal cortical toxin HgCl2, in the rat, using urine as an indicator of metabolic homeostasis disruption. This method provided an unbiased, sensitive approach to biomarker extraction and identification, and showed potential for generating potential novel pathway connectivities.

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Year:  2006        PMID: 16739983     DOI: 10.1021/pr050399w

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  16 in total

1.  Use of optimized 1D TOCSY NMR for improved quantitation and metabolomic analysis of biofluids.

Authors:  Peter Sandusky; Emmanuel Appiah-Amponsah; Daniel Raftery
Journal:  J Biomol NMR       Date:  2011-03-10       Impact factor: 2.835

Review 2.  NMR-spectroscopic analysis of mixtures: from structure to function.

Authors:  Ry R Forseth; Frank C Schroeder
Journal:  Curr Opin Chem Biol       Date:  2010-11-09       Impact factor: 8.822

3.  Identifying unknown metabolites using NMR-based metabolic profiling techniques.

Authors:  Isabel Garcia-Perez; Joram M Posma; Jose Ivan Serrano-Contreras; Claire L Boulangé; Queenie Chan; Gary Frost; Jeremiah Stamler; Paul Elliott; John C Lindon; Elaine Holmes; Jeremy K Nicholson
Journal:  Nat Protoc       Date:  2020-07-17       Impact factor: 13.491

4.  Method for determining molar concentrations of metabolites in complex solutions from two-dimensional 1H-13C NMR spectra.

Authors:  Ian A Lewis; Seth C Schommer; Brendan Hodis; Kate A Robb; Marco Tonelli; William M Westler; Michael R Sussman; John L Markley
Journal:  Anal Chem       Date:  2007-11-07       Impact factor: 6.986

5.  RAMSY: ratio analysis of mass spectrometry to improve compound identification.

Authors:  Haiwei Gu; G A Nagana Gowda; Fausto Carnevale Neto; Mark R Opp; Daniel Raftery
Journal:  Anal Chem       Date:  2013-10-29       Impact factor: 6.986

6.  In vivo biodistribution and biological impact of injected carbon nanotubes using magnetic resonance techniques.

Authors:  Achraf Al Faraj; Florence Fauvelle; Nathalie Luciani; Ghislaine Lacroix; Michael Levy; Yannick Crémillieux; Emmanuelle Canet-Soulas
Journal:  Int J Nanomedicine       Date:  2011-02-15

7.  An HR-MAS MR metabolomics study on breast tissues obtained with core needle biopsy.

Authors:  MuLan Li; Yonghyun Song; Nariya Cho; Jung Min Chang; Hye Ryoung Koo; Ann Yi; Hyeonjin Kim; Sunghyouk Park; Woo Kyung Moon
Journal:  PLoS One       Date:  2011-10-18       Impact factor: 3.240

8.  NMR in metabolomics and natural products research: two sides of the same coin.

Authors:  Steven L Robinette; Rafael Brüschweiler; Frank C Schroeder; Arthur S Edison
Journal:  Acc Chem Res       Date:  2011-09-02       Impact factor: 22.384

9.  MetaFIND: a feature analysis tool for metabolomics data.

Authors:  Kenneth Bryan; Lorraine Brennan; Pádraig Cunningham
Journal:  BMC Bioinformatics       Date:  2008-11-05       Impact factor: 3.169

10.  A top-down systems biology view of microbiome-mammalian metabolic interactions in a mouse model.

Authors:  François-Pierre J Martin; Marc-Emmanuel Dumas; Yulan Wang; Cristina Legido-Quigley; Ivan K S Yap; Huiru Tang; Séverine Zirah; Gerard M Murphy; Olivier Cloarec; John C Lindon; Norbert Sprenger; Laurent B Fay; Sunil Kochhar; Peter van Bladeren; Elaine Holmes; Jeremy K Nicholson
Journal:  Mol Syst Biol       Date:  2007-05-22       Impact factor: 11.429

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