Literature DB >> 16739738

Study of apoptosis in vitro using the Xenopus egg extract reconstitution system.

Paula Deming1, Sally Kornbluth.   

Abstract

It was first shown by Newmeyer and colleagues in the 1990s that the molecular events of apoptosis could be reconstituted in vitro using Xenopus egg extracts. When the egg extract is allowed to incubate at room temperature for an extended time, the biochemical events of apoptosis are activated spontaneously. The features of apoptosis in the Xenopus reconstitution system mimic those that occur in mammalian cells: Cytochrome c is released from the mitochondria, caspases are activated, cellular substrates are cleaved, and added nuclei are fragmented. Moreover, these apoptotic events can be inhibited by addition of antiapoptotic proteins such as Bcl-2 and conventional caspase inhibitors (e.g., ZVAD-fmk). The mitochondria, which are triggered to release cytochrome c by as-yet-unknown signals in the extract, are essential for induction of the spontaneous apoptotic program in these extracts. However, one can study the apoptotic events that occur downstream of mitochondrial cytochrome c release by preparing extracts devoid of membrane components (including mitochondria). When purified cytochrome c is added to such cytosolic extracts, biochemical markers of apoptosis (e.g., activation of caspases) can be monitored. The egg extract therefore offers a tractable system for studying either separately or together the events of apoptosis occurring upstream and downstream of the mitochondria.

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Year:  2006        PMID: 16739738     DOI: 10.1007/978-1-59745-000-3_27

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  17 in total

1.  Aven-dependent activation of ATM following DNA damage.

Authors:  Jessie Yanxiang Guo; Ayumi Yamada; Taisuke Kajino; Judy Qiju Wu; Wanli Tang; Christopher D Freel; Junjie Feng; B Nelson Chau; Michael Zhuo Wang; Seth S Margolis; Hae Yong Yoo; Xiao-Fan Wang; William G Dunphy; Pablo M Irusta; J Marie Hardwick; Sally Kornbluth
Journal:  Curr Biol       Date:  2008-06-19       Impact factor: 10.834

2.  Anti-apoptotic activity and proteasome-mediated degradation of Xenopus Mcl-1 protein in egg extracts.

Authors:  Yuichi Tsuchiya; Shigeru Yamashita
Journal:  J Biol Chem       Date:  2011-03-17       Impact factor: 5.157

Review 3.  Screening for small molecule inhibitors of embryonic pathways: sometimes you gotta crack a few eggs.

Authors:  Brian I Hang; Curtis A Thorne; David J Robbins; Stacey S Huppert; Laura A Lee; Ethan Lee
Journal:  Bioorg Med Chem       Date:  2011-12-30       Impact factor: 3.641

4.  Apoptosis propagates through the cytoplasm as trigger waves.

Authors:  Xianrui Cheng; James E Ferrell
Journal:  Science       Date:  2018-08-10       Impact factor: 47.728

Review 5.  Development of Xenopus resource centers: the National Xenopus Resource and the European Xenopus Resource Center.

Authors:  Esther J Pearl; Robert M Grainger; Matthew Guille; Marko E Horb
Journal:  Genesis       Date:  2012-02-16       Impact factor: 2.487

6.  Identification of targets of the Wnt pathway destruction complex in addition to beta-catenin.

Authors:  Nam-Gyun Kim; Chong Xu; Barry M Gumbiner
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-16       Impact factor: 11.205

7.  Chemical Screening Using Cell-Free Xenopus Egg Extract.

Authors:  Matthew R Broadus; Ethan Lee
Journal:  Cold Spring Harb Protoc       Date:  2018-08-01

8.  Xenopus laevis Egg Extract Preparation and Live Imaging Methods for Visualizing Dynamic Cytoplasmic Organization.

Authors:  Xianrui Cheng; James E Ferrell
Journal:  J Vis Exp       Date:  2021-06-06       Impact factor: 1.355

9.  Unfertilized Xenopus eggs die by Bad-dependent apoptosis under the control of Cdk1 and JNK.

Authors:  David Du Pasquier; Aude Dupré; Catherine Jessus
Journal:  PLoS One       Date:  2011-08-16       Impact factor: 3.240

10.  Inhibition of apoptosis by ascorbic and dehydroascorbic acids in Xenopus egg extracts.

Authors:  Tomohiro Saitoh; Yuichi Tsuchiya; Toshihiko Kinoshita; Motohiro Itoh; Shigeru Yamashita
Journal:  Reprod Med Biol       Date:  2008-12-13
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