Literature DB >> 16728446

Developmental mouse brain gene expression maps.

Craig L Brumwell1, Tom Curran.   

Abstract

Brain gene expression databases are providing an increasing amount of information to the neuroscience community. Most databases are focused on the adult mouse rather than embryonic development. Here we survey the major mouse gene expression databases for the developing brain. The high throughput in situ hybridization approach generates large volumes of gene expression data that can be compiled and examined in a relatively short period of time. It is of increasing importance to compare gene expression patterns of neurodevelopment in the brain in relation to the adult. Often clues to adult gene expression and gene function can be determined by examining embryonic development. It is our hope that once all genes are mapped in the brain from the embryo to the adult, studies can be conducting based on information derived from such databases in conjunction with other bioinformatics sources.

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Year:  2006        PMID: 16728446      PMCID: PMC1819460          DOI: 10.1113/jphysiol.2006.112607

Source DB:  PubMed          Journal:  J Physiol        ISSN: 0022-3751            Impact factor:   5.182


  7 in total

1.  GenePaint.org: an atlas of gene expression patterns in the mouse embryo.

Authors:  Axel Visel; Christina Thaller; Gregor Eichele
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  Gene expression nervous system atlas (GENSAT).

Authors:  Nathaniel Heintz
Journal:  Nat Neurosci       Date:  2004-05       Impact factor: 24.884

3.  A neurogenomics approach to gene expression analysis in the developing brain.

Authors:  Patricia Jensen; Susan Magdaleno; Karen M Lehman; Dennis S Rice; Edward R Lavallie; Lisa Collins-Racie; J M McCoy; Tom Curran
Journal:  Brain Res Mol Brain Res       Date:  2004-12-20

Review 4.  Towards the integration of spatially and temporally resolved murine gene expression databases.

Authors:  Susan M Sunkin
Journal:  Trends Genet       Date:  2006-02-23       Impact factor: 11.639

5.  A gene expression atlas of the central nervous system based on bacterial artificial chromosomes.

Authors:  Shiaoching Gong; Chen Zheng; Martin L Doughty; Kasia Losos; Nicholas Didkovsky; Uta B Schambra; Norma J Nowak; Alexandra Joyner; Gabrielle Leblanc; Mary E Hatten; Nathaniel Heintz
Journal:  Nature       Date:  2003-10-30       Impact factor: 49.962

6.  EMAGE: a spatial database of gene expression patterns during mouse embryo development.

Authors:  Jeffrey H Christiansen; Yiya Yang; Shanmugasundaram Venkataraman; Lorna Richardson; Peter Stevenson; Nicholas Burton; Richard A Baldock; Duncan R Davidson
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

7.  BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system.

Authors:  Susan Magdaleno; Patricia Jensen; Craig L Brumwell; Anna Seal; Karen Lehman; Andrew Asbury; Tony Cheung; Tommie Cornelius; Diana M Batten; Christopher Eden; Shannon M Norland; Dennis S Rice; Nilesh Dosooye; Sundeep Shakya; Perdeep Mehta; Tom Curran
Journal:  PLoS Biol       Date:  2006-03-28       Impact factor: 8.029

  7 in total
  4 in total

1.  The mammalian transcriptome and the cellular complexity of the brain.

Authors:  Enrico Cherubini; S Gustincich; H Robinson
Journal:  J Physiol       Date:  2006-08-03       Impact factor: 5.182

2.  Enhancement of histological volumes through averaging and their use for the analysis of magnetic resonance images.

Authors:  Xia Li; Thomas E Yankeelov; Glenn D Rosen; John C Gore; Benoit M Dawant
Journal:  Magn Reson Imaging       Date:  2008-09-10       Impact factor: 2.546

3.  The RNA recognition motif protein RBM11 is a novel tissue-specific splicing regulator.

Authors:  Simona Pedrotti; Roberta Busà; Claudia Compagnucci; Claudio Sette
Journal:  Nucleic Acids Res       Date:  2011-10-07       Impact factor: 16.971

4.  Digital atlases as a framework for data sharing.

Authors:  Jyl Boline; Erh-Fang Lee; Arthur W Toga
Journal:  Front Neurosci       Date:  2008-07-14       Impact factor: 4.677

  4 in total

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