Literature DB >> 16724228

Density functional theory investigations of NiN2S2 reactivity as a function of nitrogen donor type and N-H...S hydrogen bonding inspired by nickel-containing superoxide dismutase.

C S Mullins1, C A Grapperhaus, P M Kozlowski.   

Abstract

Density functional theory calculations on a series of six square-planar NiN2S2 complexes have been performed. The nitrogen donor type was varied from diamino in Ni(bme-dmed), 1, to amino-amido in [Ni(mama)]-, 2, to diamido in [Ni(ema)]2-, 3. The sulfur-oxygenated derivative Ni(bme-O2-dmed), 4, and hydrogen-bonded derivatives (5 and 6) of 2 and 3 were also studied. Full geometric optimization and subsequent population analyses were performed using the 6-311g(d,p) basis set. The frontier molecular orbitals for all complexes contain significant nickel and sulfur character. Molecular electrostatic potentials show that amido nitrogen donors increase electron density at nickel relative to sulfur. Sulfur modification further shifts electron density away from the ligand towards the metal. It is proposed that the nitrogen donor type and sulfur modification may regulate sulfur-site reactivity in nickel-containing superoxide dismutase.

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Year:  2006        PMID: 16724228     DOI: 10.1007/s00775-006-0109-6

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  24 in total

1.  Nickel-containing superoxide dismutase.

Authors:  Jin-Won Lee; Jung-Hye Roe; Sa-Ouk Kang
Journal:  Methods Enzymol       Date:  2002       Impact factor: 1.600

2.  Local molecular properties and their use in predicting reactivity.

Authors:  Bernd Ehresmann; Bodo Martin; Anselm H C Horn; Timothy Clark
Journal:  J Mol Model       Date:  2003-09-02       Impact factor: 1.810

Review 3.  Unraveling the structure and mechanism of acetyl-coenzyme A synthase.

Authors:  Eric L Hegg
Journal:  Acc Chem Res       Date:  2004-10       Impact factor: 22.384

4.  Theoretical Study of the Oxidation of Nickel Thiolate Complexes by O(2).

Authors:  Michael J. Maroney; Suranjan B. Choudhury; Peter A. Bryngelson; Shaukat A. Mirza; Michael J. Sherrod
Journal:  Inorg Chem       Date:  1996-02-14       Impact factor: 5.165

5.  A nickel superoxide dismutase maquette that reproduces the spectroscopic and functional properties of the metalloenzyme.

Authors:  Jason Shearer; Linh M Long
Journal:  Inorg Chem       Date:  2006-03-20       Impact factor: 5.165

6.  H-bonding interactions and control of thiolate nucleophilicity and specificity in model complexes of zinc metalloproteins.

Authors:  Jennifer N Smith; Justin T Hoffman; Zahida Shirin; Carl J Carrano
Journal:  Inorg Chem       Date:  2005-03-21       Impact factor: 5.165

7.  Discontinuum between a thiolate and a thiol ligand.

Authors:  Danny G McGuire; Masood A Khan; Michael T Ashby
Journal:  Inorg Chem       Date:  2002-04-22       Impact factor: 5.165

8.  Unique reactivity of a tetradentate N(2)S(2) complex of nickel: intermediates in the production of sulfur oxygenates.

Authors:  Vincent E Kaasjager; Elisabeth Bouwman; S Gorter; Jan Reedijk; Craig A Grapperhaus; Joseph H Reibenspies; Jason J Smee; Marcetta Y Darensbourg; Agnes Derecskei-Kovacs; Lisa M Thomson
Journal:  Inorg Chem       Date:  2002-04-08       Impact factor: 5.165

9.  Electronic structure control of the nucleophilicity of transition metal-thiolate complexes: an experimental and theoretical study.

Authors:  Derek C Fox; Adam T Fiedler; Heather L Halfen; Thomas C Brunold; Jason A Halfen
Journal:  J Am Chem Soc       Date:  2004-06-23       Impact factor: 15.419

10.  Structure of fully reduced bovine copper zinc superoxide dismutase at 1.15 A.

Authors:  Michael A Hough; S Samar Hasnain
Journal:  Structure       Date:  2003-08       Impact factor: 5.006

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  12 in total

1.  Dipeptide-based models of nickel superoxide dismutase: solvent effects highlight a critical role to Ni-S bonding and active site stabilization.

Authors:  Eric M Gale; Darin M Cowart; Robert A Scott; Todd C Harrop
Journal:  Inorg Chem       Date:  2011-09-20       Impact factor: 5.165

2.  Bisamidate and mixed amine/amidate NiN2S2 complexes as models for nickel-containing acetyl coenzyme A synthase and superoxide dismutase: an experimental and computational study.

Authors:  Vaidyanathan Mathrubootham; Jason Thomas; Richard Staples; John McCraken; Jason Shearer; Eric L Hegg
Journal:  Inorg Chem       Date:  2010-06-21       Impact factor: 5.165

3.  Synthesis and ligand non-innocence of thiolate-ligated (N4S) Iron(II) and nickel(II) bis(imino)pyridine complexes.

Authors:  Leland R Widger; Yunbo Jiang; Maxime A Siegler; Devesh Kumar; Reza Latifi; Sam P de Visser; Guy N L Jameson; David P Goldberg
Journal:  Inorg Chem       Date:  2013-08-30       Impact factor: 5.165

4.  Accessing Ni(III)-thiolate versus Ni(II)-thiyl bonding in a family of Ni-N2S2 synthetic models of NiSOD.

Authors:  Ellen P Broering; Stephanie Dillon; Eric M Gale; Ramsey A Steiner; Joshua Telser; Thomas C Brunold; Todd C Harrop
Journal:  Inorg Chem       Date:  2015-04-02       Impact factor: 5.165

5.  Spectroscopic and computational investigation of three Cys-to-Ser mutants of nickel superoxide dismutase: insight into the roles played by the Cys2 and Cys6 active-site residues.

Authors:  Olivia E Johnson; Kelly C Ryan; Michael J Maroney; Thomas C Brunold
Journal:  J Biol Inorg Chem       Date:  2010-03-24       Impact factor: 3.358

6.  Infrared and EPR spectroscopic characterization of a Ni(I) species formed by photolysis of a catalytically competent Ni(I)-CO intermediate in the acetyl-CoA synthase reaction.

Authors:  Güneş Bender; Troy A Stich; Lifen Yan; R David Britt; Stephen P Cramer; Stephen W Ragsdale
Journal:  Biochemistry       Date:  2010-09-07       Impact factor: 3.162

7.  The Role of Mixed Amine/Amide Ligation in Nickel Superoxide Dismutase.

Authors:  Hsin-Ting Huang; Stephanie Dillon; Kelly C Ryan; Julius O Campecino; Olivia E Watkins; Diane E Cabelli; Thomas C Brunold; Michael J Maroney
Journal:  Inorg Chem       Date:  2018-10-03       Impact factor: 5.165

8.  Imidazole-containing (N3S)-Ni(II) complexes relating to nickel containing biomolecules.

Authors:  Roxanne M Jenkins; Michael L Singleton; Elky Almaraz; Joseph H Reibenspies; Marcetta Y Darensbourg
Journal:  Inorg Chem       Date:  2009-08-03       Impact factor: 5.165

9.  Substrate binding preferences and pka determinations of a nitrile hydratase model complex: variable solvent coordination to [(bmmp-TASN)Fe]OTf.

Authors:  Martin G O'Toole; Brian Bennett; Mark S Mashuta; Craig A Grapperhaus
Journal:  Inorg Chem       Date:  2009-03-02       Impact factor: 5.165

10.  Chemical issues addressing the construction of the distal Ni[cysteine-glycine-cysteine]2- site of acetyl CoA synthase: why not copper?

Authors:  Kayla N Green; Scott M Brothers; Boram Lee; Marcetta Y Darensbourg; David A Rockcliffe
Journal:  Inorg Chem       Date:  2009-04-06       Impact factor: 5.165

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