Literature DB >> 16720113

The effect of the presence of globular proteins and elongated polymers on enzyme activity.

Barry K Derham1, John J Harding.   

Abstract

We have studied the effect of a crowded (macromolecular) solution on reaction rates of the decarboxylating enzymes urease, pyruvate decarboxylase and glutamate decarboxylase. A variety of crowding agents were used including haemoglobin, lysozyme, various dextrans and polyethylene glycol. Enzyme reaction rates of all three enzymes show two different types of effect that separate the globular proteins from the polysaccharides/polymers. Increasing concentration of globular proteins caused a dramatic rise in enzyme activity up to 30% crowding concentration then the activity decreased, whereas the polymers caused a concentration dependent decrease in activity. The viscosities of the globular proteins were low compared to the polymers. The increased activity with proteins may be due to the decreased amount of free water, which leads to higher effective concentration of substrates, or to an increased oligomeric state by self-association. The lower activities of all enzymes with all agents at high concentrations may be explained by a decrease in rates of diffusion. An increase in protein crowding (decrease in cell water content) may contribute to pathological conditions including cataract and Alzheimer's disease.

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Year:  2006        PMID: 16720113     DOI: 10.1016/j.bbapap.2006.01.005

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  15 in total

Review 1.  Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences.

Authors:  Huan-Xiang Zhou; Germán Rivas; Allen P Minton
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

2.  Molecular crowding enhances facilitated diffusion of two human DNA glycosylases.

Authors:  Shannen L Cravens; Joseph D Schonhoft; Meng M Rowland; Alyssa A Rodriguez; Breeana G Anderson; James T Stivers
Journal:  Nucleic Acids Res       Date:  2015-04-06       Impact factor: 16.971

3.  Large cosolutes, small cosolutes, and dihydrofolate reductase activity.

Authors:  Luis C Acosta; Gerardo M Perez Goncalves; Gary J Pielak; Annelise H Gorensek-Benitez
Journal:  Protein Sci       Date:  2017-11-17       Impact factor: 6.725

4.  Crowders Steal Dihydrofolate Reductase Ligands through Quinary Interactions.

Authors:  Michael R Duff; Nidhi Desai; Michael A Craig; Pratul K Agarwal; Elizabeth E Howell
Journal:  Biochemistry       Date:  2019-02-18       Impact factor: 3.162

5.  Interaction of nano-TiO2 with lysozyme: insights into the enzyme toxicity of nanosized particles.

Authors:  Zhen Xu; Xi-Wei Liu; Yin-Sheng Ma; Hong-Wen Gao
Journal:  Environ Sci Pollut Res Int       Date:  2009-04-24       Impact factor: 4.223

Review 6.  Enzymatic Noncovalent Synthesis.

Authors:  Hongjian He; Weiyi Tan; Jiaqi Guo; Meihui Yi; Adrianna N Shy; Bing Xu
Journal:  Chem Rev       Date:  2020-08-19       Impact factor: 60.622

7.  Interactions of macromolecular crowding agents and cosolutes with small-molecule substrates: effect on horseradish peroxidase activity with two different substrates.

Authors:  William M Aumiller; Bradley W Davis; Emmanuel Hatzakis; Christine D Keating
Journal:  J Phys Chem B       Date:  2014-08-26       Impact factor: 2.991

Review 8.  What macromolecular crowding can do to a protein.

Authors:  Irina M Kuznetsova; Konstantin K Turoverov; Vladimir N Uversky
Journal:  Int J Mol Sci       Date:  2014-12-12       Impact factor: 5.923

9.  Observed crowding effects on Mycobacterium tuberculosis 2-trans-enoyl-ACP (CoA) reductase enzyme activity are not due to excluded volume only.

Authors:  Mariane Rotta; Luis F S M Timmers; Carlos Sequeiros-Borja; Cristiano V Bizarro; Osmar N de Souza; Diogenes S Santos; Luiz A Basso
Journal:  Sci Rep       Date:  2017-07-28       Impact factor: 4.379

10.  Cascade Kinetics in an Enzyme-Loaded Aqueous Two-Phase System.

Authors:  Marko Pavlovic; Alexander Plucinski; Jianrui Zhang; Markus Antonietti; Lukas Zeininger; Bernhard V K J Schmidt
Journal:  Langmuir       Date:  2020-02-06       Impact factor: 3.882

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