Literature DB >> 16711761

Classification tree models for the prediction of blood-brain barrier passage of drugs.

Eric Deconinck1, Menghui H Zhang, Danny Coomans, Yvan Vander Heyden.   

Abstract

The use of classification trees for modeling and predicting the passage of molecules through the blood-brain barrier was evaluated. The models were built and evaluated using a data set of 147 molecules extracted from the literature. In the first step, single classification trees were built and evaluated for their predictive abilities. In the second step, attempts were made to improve the predictive abilities using a set of 150 classification trees in a boosting approach. Two boosting algorithms, discrete and real adaptive boosting, were used and compared. High-predictive classification trees were obtained for the data set used, and the models could be improved with boosting. In the context of this research, discrete adaptive boosting gives slightly better results than real adaptive boosting.

Mesh:

Year:  2006        PMID: 16711761     DOI: 10.1021/ci050518s

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  3 in total

1.  Sequence analysis and rule development of predicting protein stability change upon mutation using decision tree model.

Authors:  Liang-Tsung Huang; M Michael Gromiha; Shinn-Ying Ho
Journal:  J Mol Model       Date:  2007-03-30       Impact factor: 1.810

2.  A method to predict blood-brain barrier permeability of drug-like compounds using molecular dynamics simulations.

Authors:  Timothy S Carpenter; Daniel A Kirshner; Edmond Y Lau; Sergio E Wong; Jerome P Nilmeier; Felice C Lightstone
Journal:  Biophys J       Date:  2014-08-05       Impact factor: 4.033

3.  Ligand Classifier of Adaptively Boosting Ensemble Decision Stumps (LiCABEDS) and its application on modeling ligand functionality for 5HT-subtype GPCR families.

Authors:  Chao Ma; Lirong Wang; Xiang-Qun Xie
Journal:  J Chem Inf Model       Date:  2011-03-07       Impact factor: 4.956

  3 in total

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