Literature DB >> 16701302

Genomics for the ecological toolbox.

Michael A Thomas1, Rebecca Klaper.   

Abstract

Genomics technologies have expanded the types of question that can be addressed in human genetics and health and in fields such as ecology. Genome-scale approaches provide ways to examine physiological changes that occur when a pathogen invades a host, the response of an organism to a change in its environment, and the way in which changes in the microbial community affect ecosystem function. Here, we examine successful applications of genomics to ecological science to date and describe ways that classic ecological research disciplines might benefit from genomic approaches. We also address some of the challenges of using this methodology, and discuss how ecological researchers embracing these approaches enhance its effectiveness in applications such as gene hunting and gene expression analysis.

Entities:  

Year:  2004        PMID: 16701302     DOI: 10.1016/j.tree.2004.06.010

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  21 in total

1.  Harnessing genomics for delineating conservation units.

Authors:  W Chris Funk; John K McKay; Paul A Hohenlohe; Fred W Allendorf
Journal:  Trends Ecol Evol       Date:  2012-06-21       Impact factor: 17.712

Review 2.  Genomes, phylogeny, and evolutionary systems biology.

Authors:  Mónica Medina
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-25       Impact factor: 11.205

Review 3.  Exploiting new systems-based strategies to elucidate plant-bacterial interactions in the rhizosphere.

Authors:  P D Kiely; J M Haynes; C H Higgins; A Franks; G L Mark; J P Morrissey; F O'Gara
Journal:  Microb Ecol       Date:  2006-04-05       Impact factor: 4.552

Review 4.  Maintenance of genetic variation in sexual ornaments: a review of the mechanisms.

Authors:  Jacek Radwan
Journal:  Genetica       Date:  2007-09-15       Impact factor: 1.082

Review 5.  A functional approach to transcriptome profiling: linking gene expression patterns to metabolites that matter.

Authors:  Cindi A Hoover; Marc Slattery; Adam G Marsh
Journal:  Mar Biotechnol (NY)       Date:  2007-05-01       Impact factor: 3.619

6.  Ecological genomics and conservation: where do we stand?

Authors:  Gernot Segelbacher; Jacob Höglund
Journal:  Genetica       Date:  2008-11-28       Impact factor: 1.082

7.  The birth of ant genomics.

Authors:  Raghavendra Gadagkar
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

8.  Gene expression profiling of three different stressors in the water flea Daphnia magna.

Authors:  Mieke Jansen; Lucia Vergauwen; Tine Vandenbrouck; Dries Knapen; Nathalie Dom; Katina I Spanier; Anke Cielen; Luc De Meester
Journal:  Ecotoxicology       Date:  2013-04-06       Impact factor: 2.823

Review 9.  Application of pharmacological approaches to plant-mammal interactions.

Authors:  Jennifer S Sorensen; Michele M Skopec; M Denise Dearing
Journal:  J Chem Ecol       Date:  2006-05-23       Impact factor: 2.626

Review 10.  The role of gene expression in ecological speciation.

Authors:  Scott A Pavey; Hélène Collin; Patrik Nosil; Sean M Rogers
Journal:  Ann N Y Acad Sci       Date:  2010-09       Impact factor: 5.691

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