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Literature DB >> 16698778

On imposing detailed balance in complex reaction mechanisms.

Jin Yang¹, William J Bruno, William S Hlavacek, John E Pearson.

Abstract

Mesh：

Substances：
Ion Channels

Year: 2006 PMID： 16698778 PMCID： PMC1563764 DOI： 10.1529/biophysj.105.071852

Source DB: PubMed Journal: Biophys J ISSN： 0006-3495 Impact factor: 4.033

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8 in total

1. A single-pool inositol 1,4,5-trisphosphate-receptor-based model for agonist-stimulated oscillations in Ca2+ concentration.

Authors: G W De Young; J Keizer
Journal: Proc Natl Acad Sci U S A Date: 1992-10-15 Impact factor: 11.205

2. How to impose microscopic reversibility in complex reaction mechanisms.

Authors: David Colquhoun; Kathryn A Dowsland; Marco Beato; Andrew J R Plested
Journal: Biophys J Date: 2004-06 Impact factor: 4.033

3. BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains.

Authors: Michael L Blinov; James R Faeder; Byron Goldstein; William S Hlavacek
Journal: Bioinformatics Date: 2004-06-24 Impact factor: 6.937

4. Steady-states of receptor-ligand dynamics: a theoretical framework.

Authors: Madalena Chaves; Eduardo D Sontag; Robert J Dinerstein
Journal: J Theor Biol Date: 2004-04-07 Impact factor: 2.691

5. Using independent open-to-closed transitions to simplify aggregated Markov models of ion channel gating kinetics.

Authors: William J Bruno; Jin Yang; John E Pearson
Journal: Proc Natl Acad Sci U S A Date: 2005-04-20 Impact factor: 11.205

6. Estimating single-channel kinetic parameters from idealized patch-clamp data containing missed events.

Authors: F Qin; A Auerbach; F Sachs
Journal: Biophys J Date: 1996-01 Impact factor: 4.033

7. Maximum likelihood estimation of aggregated Markov processes.

Authors: F Qin; A Auerbach; F Sachs
Journal: Proc Biol Sci Date: 1997-03-22 Impact factor: 5.349

8. A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity.

Authors: Michael L Blinov; James R Faeder; Byron Goldstein; William S Hlavacek
Journal: Biosystems Date: 2005-10-17 Impact factor: 1.973

8 in total

19 in total

1. Origins of concentration dependence of waiting times for single-molecule fluorescence binding.

Authors: Jin Yang; John E Pearson
Journal: J Chem Phys Date: 2012-06-28 Impact factor: 3.488

2. Thermodynamically feasible kinetic models of reaction networks.

Authors: Michael Ederer; Ernst Dieter Gilles
Journal: Biophys J Date: 2007-01-05 Impact factor: 4.033

3. A kinetic model of single and clustered IP3 receptors in the absence of Ca2+ feedback.

Authors: Jianwei Shuai; John E Pearson; J Kevin Foskett; Don-On Daniel Mak; Ian Parker
Journal: Biophys J Date: 2007-05-25 Impact factor: 4.033

4. Origins of stochasticity and burstiness in high-dimensional biochemical networks.

Authors: Simon Rosenfeld
Journal: EURASIP J Bioinform Syst Biol Date: 2008-10-16

Review 5. Modeling for (physical) biologists: an introduction to the rule-based approach.

Authors: Lily A Chylek; Leonard A Harris; James R Faeder; William S Hlavacek
Journal: Phys Biol Date: 2015-07-16 Impact factor: 2.583

Review 6. Rule-based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems.

Authors: Lily A Chylek; Leonard A Harris; Chang-Shung Tung; James R Faeder; Carlos F Lopez; William S Hlavacek
Journal: Wiley Interdiscip Rev Syst Biol Med Date: 2013-09-30