Literature DB >> 16698771

Does CO2 permeate through aquaporin-1?

Jochen S Hub1, Bert L de Groot.   

Abstract

Aquaporins facilitate water permeation across biological membranes. Additionally, glycerol and other small neutral solutes are permeated by related aquaglyceroporins. The role of aquaporins in gas permeation has been a long-standing and controversially discussed issue. We present an extensive set of atomistic molecular dynamics simulations that address the question of CO(2) permeation through human aquaporin-1. Free energy profiles derived from the simulations display a barrier of approximately 23 kJ/mol in the aromatic/arginine constriction region of the water pore, whereas a barrier of approximately 4 kJ/mol was observed for a palmitoyloleoylphosphatidylethanolamine lipid bilayer membrane. The results indicate that significant aquaporin-1-mediated CO(2) permeation is to be expected only in membranes with a low intrinsic CO(2) permeability.

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Year:  2006        PMID: 16698771      PMCID: PMC1563782          DOI: 10.1529/biophysj.106.081406

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  39 in total

1.  GROMACS: fast, flexible, and free.

Authors:  David Van Der Spoel; Erik Lindahl; Berk Hess; Gerrit Groenhof; Alan E Mark; Herman J C Berendsen
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

2.  Crystal structure of AqpZ tetramer reveals two distinct Arg-189 conformations associated with water permeation through the narrowest constriction of the water-conducting channel.

Authors:  Jiansheng Jiang; Brenda V Daniels; Dax Fu
Journal:  J Biol Chem       Date:  2005-10-20       Impact factor: 5.157

3.  Single-channel water permeabilities of Escherichia coli aquaporins AqpZ and GlpF.

Authors:  Morten Ø Jensen; Ole G Mouritsen
Journal:  Biophys J       Date:  2006-01-06       Impact factor: 4.033

4.  The effect of 4,4'-diisothiocyanato-stilbene-2,2'-disulfonate on CO2 permeability of the red blood cell membrane.

Authors:  R E Forster; G Gros; L Lin; Y Ono; M Wunder
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-22       Impact factor: 11.205

5.  Carbon dioxide permeability of aquaporin-1 measured in erythrocytes and lung of aquaporin-1 null mice and in reconstituted proteoliposomes.

Authors:  B Yang; N Fukuda; A van Hoek; M A Matthay; T Ma; A S Verkman
Journal:  J Biol Chem       Date:  2000-01-28       Impact factor: 5.157

6.  Water permeation across biological membranes: mechanism and dynamics of aquaporin-1 and GlpF.

Authors:  B L de Groot; H Grubmüller
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

7.  Structural determinants of water permeation through aquaporin-1.

Authors:  K Murata; K Mitsuoka; T Hirai; T Walz; P Agre; J B Heymann; A Engel; Y Fujiyoshi
Journal:  Nature       Date:  2000-10-05       Impact factor: 49.962

8.  Structure of a glycerol-conducting channel and the basis for its selectivity.

Authors:  D Fu; A Libson; L J Miercke; C Weitzman; P Nollert; J Krucinski; R M Stroud
Journal:  Science       Date:  2000-10-20       Impact factor: 47.728

9.  Effect of PCMBS on CO2 permeability of Xenopus oocytes expressing aquaporin 1 or its C189S mutant.

Authors:  G J Cooper; W F Boron
Journal:  Am J Physiol       Date:  1998-12

10.  Reconstituted aquaporin 1 water channels transport CO2 across membranes.

Authors:  G V Prasad; L A Coury; F Finn; M L Zeidel
Journal:  J Biol Chem       Date:  1998-12-11       Impact factor: 5.157

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  51 in total

Review 1.  Aquaporins and plant leaf movements.

Authors:  Norbert Uehlein; Ralf Kaldenhoff
Journal:  Ann Bot       Date:  2007-11-15       Impact factor: 4.357

2.  Short-range order and collective dynamics of DMPC bilayers: a comparison between molecular dynamics simulations, X-ray, and neutron scattering experiments.

Authors:  Jochen S Hub; Tim Salditt; Maikel C Rheinstädter; Bert L de Groot
Journal:  Biophys J       Date:  2007-07-13       Impact factor: 4.033

Review 3.  Plant aquaporin selectivity: where transport assays, computer simulations and physiology meet.

Authors:  Uwe Ludewig; Marek Dynowski
Journal:  Cell Mol Life Sci       Date:  2009-06-30       Impact factor: 9.261

4.  Plant aquaporins with non-aqua functions: deciphering the signature sequences.

Authors:  Runyararo Memory Hove; Mrinal Bhave
Journal:  Plant Mol Biol       Date:  2011-02-10       Impact factor: 4.076

Review 5.  Molecular Dynamics Simulations of Membrane Permeability.

Authors:  Richard M Venable; Andreas Krämer; Richard W Pastor
Journal:  Chem Rev       Date:  2019-02-12       Impact factor: 60.622

6.  In silico study of amphiphilic nanotubes based on cyclic peptides in polar and non-polar solvent.

Authors:  Vinodhkumar Vijayakumar; Ramadoss Vijayaraj; Günther H Peters
Journal:  J Mol Model       Date:  2016-10-13       Impact factor: 1.810

7.  Mechanism of selectivity in aquaporins and aquaglyceroporins.

Authors:  Jochen S Hub; Bert L de Groot
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-17       Impact factor: 11.205

8.  Function of Nicotiana tabacum aquaporins as chloroplast gas pores challenges the concept of membrane CO2 permeability.

Authors:  Norbert Uehlein; Beate Otto; David T Hanson; Matthias Fischer; Nate McDowell; Ralf Kaldenhoff
Journal:  Plant Cell       Date:  2008-03-18       Impact factor: 11.277

9.  High-resolution x-ray structure of human aquaporin 5.

Authors:  Rob Horsefield; Kristina Nordén; Maria Fellert; Anna Backmark; Susanna Törnroth-Horsefield; Anke C Terwisscha van Scheltinga; Jan Kvassman; Per Kjellbom; Urban Johanson; Richard Neutze
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-03       Impact factor: 11.205

10.  Genome-wide analysis of major intrinsic proteins in the tree plant Populus trichocarpa: characterization of XIP subfamily of aquaporins from evolutionary perspective.

Authors:  Anjali Bansal Gupta; Ramasubbu Sankararamakrishnan
Journal:  BMC Plant Biol       Date:  2009-11-20       Impact factor: 4.215

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