Literature DB >> 16691474

Structure and mechanism of vacuolar Na+-translocating ATPase from Enterococcus hirae.

Takeshi Murata1, Ichiro Yamato, Yoshimi Kakinuma.   

Abstract

V-type Na(+)-ATPase from Entercoccus hirae consists of nine kinds of subunits (NtpA(3), B(3), C(1), D(1), E(1-3), F(1-3), G(1), I(1), and K(10)) which are encoded by the ntp operon. The amino acid sequences of the major subunits, A, B, and K (proteolipid), were highly similar to those of A, B, and c subunits of eukaryotic V-ATPases, and those of beta, alpha, and c subunits of F-ATPases. We modeled the A and B subunits by homology modeling using the structure of beta and alpha subunits of F-ATPase, and obtained an atomic structure of NtpK ring by X-ray crystallography. Here we briefly summarize our current models of the whole structure and mechanism of the E. hirae V-ATPase.

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Year:  2005        PMID: 16691474     DOI: 10.1007/s10863-005-9481-0

Source DB:  PubMed          Journal:  J Bioenerg Biomembr        ISSN: 0145-479X            Impact factor:   3.853


  12 in total

Review 1.  Critical evaluation of the one- versus the two-channel model for the operation of the ATP synthase's F(o) motor.

Authors:  P Dimroth; U Matthey; G Kaim
Journal:  Biochim Biophys Acta       Date:  2000-08-15

2.  Crystal structure of a central stalk subunit C and reversible association/dissociation of vacuole-type ATPase.

Authors:  Momi Iwata; Hiromi Imamura; Elizabeth Stambouli; Chiyo Ikeda; Masatada Tamakoshi; Koji Nagata; Hisayoshi Makyio; Ben Hankamer; Jim Barber; Masasuke Yoshida; Ken Yokoyama; So Iwata
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-18       Impact factor: 11.205

3.  Crystal structure of yeast V-ATPase subunit C reveals its stator function.

Authors:  Omri Drory; Felix Frolow; Nathan Nelson
Journal:  EMBO Rep       Date:  2004-12       Impact factor: 8.807

4.  Structure of the rotor of the V-Type Na+-ATPase from Enterococcus hirae.

Authors:  Takeshi Murata; Ichiro Yamato; Yoshimi Kakinuma; Andrew G W Leslie; John E Walker
Journal:  Science       Date:  2005-03-31       Impact factor: 47.728

5.  Purification and reconstitution of Na+-translocating vacuolar ATPase from Enterococcus hirae.

Authors:  T Murata; K Takase; I Yamato; K Igarashi; Y Kakinuma
Journal:  J Biol Chem       Date:  1997-10-03       Impact factor: 5.157

Review 6.  Structure, function and regulation of the vacuolar (H+)-ATPase.

Authors:  T H Stevens; M Forgac
Journal:  Annu Rev Cell Dev Biol       Date:  1997       Impact factor: 13.827

7.  Nucleotide-binding sites in V-type Na+-ATPase from Enterococcus hirae.

Authors:  Takeshi Murata; Yasushi Yoshikawa; Toshiaki Hosaka; Kazuma Takase; Yoshimi Kakinuma; Ichiro Yamato; Takeshi Kikuchi
Journal:  J Biochem       Date:  2002-11       Impact factor: 3.387

8.  Crystal structure of the regulatory subunit H of the V-type ATPase of Saccharomyces cerevisiae.

Authors:  M Sagermann; T H Stevens; B W Matthews
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-19       Impact factor: 11.205

9.  Arginine residue at position 573 in Enterococcus hirae vacuolar-type ATPase NtpI subunit plays a crucial role in Na+ translocation.

Authors:  Miyuki Kawano; Kazuei Igarashi; Ichiro Yamato; Yoshimi Kakinuma
Journal:  J Biol Chem       Date:  2002-04-30       Impact factor: 5.157

10.  Identification of nucleotide binding sites in V-type Na+-ATPase from Enterococcus hirae.

Authors:  Toshiaki Hosaka; Takeshi Murata; Yoshimi Kakinuma; Ichiro Yamato
Journal:  Biosci Biotechnol Biochem       Date:  2004-02       Impact factor: 2.043

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  15 in total

1.  Dodecamer rotor ring defines H+/ATP ratio for ATP synthesis of prokaryotic V-ATPase from Thermus thermophilus.

Authors:  Masashi Toei; Christoph Gerle; Masahiro Nakano; Kazutoshi Tani; Nobuhiko Gyobu; Masatada Tamakoshi; Nobuhito Sone; Masasuke Yoshida; Yoshinori Fujiyoshi; Kaoru Mitsuoka; Ken Yokoyama
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-11       Impact factor: 11.205

2.  Structure of the rotor ring modified with N,N'-dicyclohexylcarbodiimide of the Na+-transporting vacuolar ATPase.

Authors:  Kenji Mizutani; Misaki Yamamoto; Kano Suzuki; Ichiro Yamato; Yoshimi Kakinuma; Mikako Shirouzu; John E Walker; Shigeyuki Yokoyama; So Iwata; Takeshi Murata
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-03       Impact factor: 11.205

3.  Rotation mechanism of Enterococcus hirae V1-ATPase based on asymmetric crystal structures.

Authors:  Satoshi Arai; Shinya Saijo; Kano Suzuki; Kenji Mizutani; Yoshimi Kakinuma; Yoshiko Ishizuka-Katsura; Noboru Ohsawa; Takaho Terada; Mikako Shirouzu; Shigeyuki Yokoyama; So Iwata; Ichiro Yamato; Takeshi Murata
Journal:  Nature       Date:  2013-01-13       Impact factor: 49.962

4.  Torque generation of Enterococcus hirae V-ATPase.

Authors:  Hiroshi Ueno; Yoshihiro Minagawa; Mayu Hara; Suhaila Rahman; Ichiro Yamato; Eiro Muneyuki; Hiroyuki Noji; Takeshi Murata; Ryota Iino
Journal:  J Biol Chem       Date:  2014-09-25       Impact factor: 5.157

5.  Cooperation of the conserved aspartate 439 and bound amino acid substrate is important for high-affinity Na+ binding to the glutamate transporter EAAC1.

Authors:  Zhen Tao; Christof Grewer
Journal:  J Gen Physiol       Date:  2007-04       Impact factor: 4.086

6.  Domain features of the peripheral stalk subunit H of the methanogenic A1AO ATP synthase and the NMR solution structure of H(1-47).

Authors:  Goran Biuković; Shovanlal Gayen; Konstantin Pervushin; Gerhard Grüber
Journal:  Biophys J       Date:  2009-07-08       Impact factor: 4.033

7.  Ion binding and selectivity of the rotor ring of the Na+-transporting V-ATPase.

Authors:  Takeshi Murata; Ichiro Yamato; Yoshimi Kakinuma; Mikako Shirouzu; John E Walker; Shigeyuki Yokoyama; So Iwata
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-16       Impact factor: 11.205

8.  A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem.

Authors:  Hideto Takami; Hideki Noguchi; Yoshihiro Takaki; Ikuo Uchiyama; Atsushi Toyoda; Shinro Nishi; Gab-Joo Chee; Wataru Arai; Takuro Nunoura; Takehiko Itoh; Masahira Hattori; Ken Takai
Journal:  PLoS One       Date:  2012-01-27       Impact factor: 3.240

9.  A functional genomics approach to establish the complement of carbohydrate transporters in Streptococcus pneumoniae.

Authors:  Alessandro Bidossi; Laura Mulas; Francesca Decorosi; Leonarda Colomba; Susanna Ricci; Gianni Pozzi; Josef Deutscher; Carlo Viti; Marco Rinaldo Oggioni
Journal:  PLoS One       Date:  2012-03-13       Impact factor: 3.240

10.  Trehalose-Induced Remodelling of the Human Microbiota Affects Clostridioides difficile Infection Outcome in an In Vitro Colonic Model: A Pilot Study.

Authors:  Anthony M Buckley; Ines B Moura; Norie Arai; William Spittal; Emma Clark; Yoshihiro Nishida; Hannah C Harris; Karen Bentley; Georgina Davis; Dapeng Wang; Suparna Mitra; Takanobu Higashiyama; Mark H Wilcox
Journal:  Front Cell Infect Microbiol       Date:  2021-07-02       Impact factor: 5.293

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