Literature DB >> 16689639

NMR techniques for very large proteins and rnas in solution.

Andreas G Tzakos1, Christy R R Grace, Peter J Lukavsky, Roland Riek.   

Abstract

Three-dimensional structure determination of small proteins and oligonucleotides by solution NMR is established. With the development of novel NMR and labeling techniques, structure determination is now feasible for proteins with a molecular mass of up to approximately 100 kDa and RNAs of up to 35 kDa. Beyond these molecular masses special techniques and approaches are required for applying NMR as a multiprobe method for structural investigations of proteins and RNAs. It is the aim of this review to summarize the NMR techniques and approaches available to advance the molecular mass limit of NMR both for proteins (up to 1 MDa) and RNAs (up to 100 kDa). Physical pictures of the novel techniques, their experimental applications, as well as labeling and assignment strategies are discussed and accompanied by future perspectives.

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Year:  2006        PMID: 16689639     DOI: 10.1146/annurev.biophys.35.040405.102034

Source DB:  PubMed          Journal:  Annu Rev Biophys Biomol Struct        ISSN: 1056-8700


  34 in total

1.  Domain cooperativity in multidomain proteins: what can we learn from molecular alignment in anisotropic media?

Authors:  Tairan Yuwen; Carol Beth Post; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

2.  Peeking into living eukaryotic cells with high-resolution NMR.

Authors:  Lisa M Charlton; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-31       Impact factor: 11.205

Review 3.  Solution NMR of large molecules and assemblies.

Authors:  Mark P Foster; Craig A McElroy; Carlos D Amero
Journal:  Biochemistry       Date:  2007-01-16       Impact factor: 3.162

4.  Using surface envelopes to constrain molecular modeling.

Authors:  Jonathan M Dugan; Russ B Altman
Journal:  Protein Sci       Date:  2007-07       Impact factor: 6.725

Review 5.  The neurobiologist's guide to structural biology: a primer on why macromolecular structure matters and how to evaluate structural data.

Authors:  Daniel L Minor
Journal:  Neuron       Date:  2007-05-24       Impact factor: 17.173

6.  NMR resonance assignments for sparsely 15N labeled proteins.

Authors:  Lianmei Feng; Han-Seung Lee; James H Prestegard
Journal:  J Biomol NMR       Date:  2007-05-09       Impact factor: 2.835

7.  High-resolution conformation and backbone dynamics of a soluble aggregate of apomyoglobin119.

Authors:  Senapathy Rajagopalan; Neşe Kurt; Silvia Cavagnero
Journal:  Biophys J       Date:  2011-02-02       Impact factor: 4.033

8.  A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA.

Authors:  Wipapat Kladwang; Pablo Cordero; Rhiju Das
Journal:  RNA       Date:  2011-01-14       Impact factor: 4.942

9.  Carbonyl carbon label selective (CCLS) 1H-15N HSQC experiment for improved detection of backbone 13C-15N cross peaks in larger proteins.

Authors:  Marco Tonelli; Larry R Masterson; Klaas Hallenga; Gianluigi Veglia; John L Markley
Journal:  J Biomol NMR       Date:  2007-09-09       Impact factor: 2.835

10.  Preparation of selective and segmentally labeled single-stranded DNA for NMR by self-primed PCR and asymmetrical endonuclease double digestion.

Authors:  Frank H T Nelissen; Frederic C Girard; Marco Tessari; Hans A Heus; Sybren S Wijmenga
Journal:  Nucleic Acids Res       Date:  2009-06-24       Impact factor: 16.971

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