Literature DB >> 16688326

Ubiquitin: a small protein folding paradigm.

Sophie E Jackson1.   

Abstract

For the past twenty years, the small, 76-residue protein ubiquitin has been used as a model system to study protein structure, stability, folding and dynamics. In this time, ubiquitin has become a paradigm for both the experimental and computational folding communities. The folding energy landscape is now uniquely characterised with a plethora of information available on not only the native and denatured states, but partially structured states, alternatively folded states and locally unfolded states, in addition to the transition state ensemble. This Perspective focuses on the experimental characterisation of ubiquitin using a comprehensive range of biophysical techniques.

Mesh:

Substances:

Year:  2006        PMID: 16688326     DOI: 10.1039/b600829c

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  24 in total

1.  Complexes of native ubiquitin and dodecyl sulfate illustrate the nature of hydrophobic and electrostatic interactions in the binding of proteins and surfactants.

Authors:  Bryan F Shaw; Grégory F Schneider; Haribabu Arthanari; Max Narovlyansky; Demetri Moustakas; Armando Durazo; Gerhard Wagner; George M Whitesides
Journal:  J Am Chem Soc       Date:  2011-10-13       Impact factor: 15.419

2.  A "Link-Psi" strategy using crosslinking indicates that the folding transition state of ubiquitin is not very malleable.

Authors:  Ali T Shandiz; Michael C Baxa; Tobin R Sosnick
Journal:  Protein Sci       Date:  2012-04-23       Impact factor: 6.725

3.  Visualizing transient protein-folding intermediates by tryptophan-scanning mutagenesis.

Authors:  Alexis Vallée-Bélisle; Stephen W Michnick
Journal:  Nat Struct Mol Biol       Date:  2012-06-10       Impact factor: 15.369

4.  Transfer of structural elements from compact to extended states in unsolvated ubiquitin.

Authors:  Stormy L Koeniger; Samuel I Merenbloom; Sundarapandian Sevugarajan; David E Clemmer
Journal:  J Am Chem Soc       Date:  2006-09-06       Impact factor: 15.419

5.  Conformation types of ubiquitin [M+8H]8+ Ions from water:methanol solutions: evidence for the N and A States in aqueous solution.

Authors:  Huilin Shi; Nicholas A Pierson; Stephen J Valentine; David E Clemmer
Journal:  J Phys Chem B       Date:  2012-03-02       Impact factor: 2.991

6.  Protein folding and unfolding studied at atomic resolution by fast two-dimensional NMR spectroscopy.

Authors:  Paul Schanda; Vincent Forge; Bernhard Brutscher
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-25       Impact factor: 11.205

7.  X-ray scattering experiments with high-flux X-ray source coupled rapid mixing microchannel device and their potential for high-flux neutron scattering investigations.

Authors:  R Jain; M Petri; S Kirschbaum; H Feindt; S Steltenkamp; S Sonnenkalb; S Becker; C Griesinger; A Menzel; T P Burg; S Techert
Journal:  Eur Phys J E Soft Matter       Date:  2013-09-27       Impact factor: 1.890

8.  Monitoring 15N Chemical Shifts During Protein Folding by Pressure-Jump NMR.

Authors:  Cyril Charlier; Joseph M Courtney; T Reid Alderson; Philip Anfinrud; Ad Bax
Journal:  J Am Chem Soc       Date:  2018-06-25       Impact factor: 15.419

9.  Copper-triggered aggregation of ubiquitin.

Authors:  Fabio Arnesano; Simone Scintilla; Vincenza Calò; Elena Bonfrate; Chiara Ingrosso; Maurizio Losacco; Teresa Pellegrino; Enrico Rizzarelli; Giovanni Natile
Journal:  PLoS One       Date:  2009-09-16       Impact factor: 3.240

10.  Effects of Fe(II)/H2O2 oxidation on ubiquitin conformers measured by ion mobility-mass spectrometry.

Authors:  Huilin Shi; Liqing Gu; David E Clemmer; Renã A S Robinson
Journal:  J Phys Chem B       Date:  2012-12-19       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.