Literature DB >> 16687617

Structure and visualization of high-dimensional conductance spaces.

Adam L Taylor1, Timothy J Hickey, Astrid A Prinz, Eve Marder.   

Abstract

Neurons, and realistic models of neurons, typically express several different types of voltage-gated conductances. These conductances are subject to continual regulation. Therefore it is essential to understand how changes in the conductances of a neuron affect its intrinsic properties, such as burst period or delay to firing after inhibition of a particular duration and magnitude. Even in model neurons, it can be difficult to visualize how the intrinsic properties vary as a function of their underlying maximal conductances. We used a technique, called clutter-based dimension reordering (CBDR), which enabled us to visualize intrinsic properties in high-dimensional conductance spaces. We applied CBDR to a family of models with eight different types of voltage- and calcium-dependent channels. CBDR yields images that reveal structure in the underlying conductance space. CBDR can also be used to visualize the results of other types of analysis. As examples, we use CBDR to visualize the results of a connected-components analysis, and to visually evaluate the results of a separating-hyperplane (i.e., linear classifier) analysis. We believe that CBDR will be a useful tool for visualizing the conductance spaces of neuronal models in many systems.

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Year:  2006        PMID: 16687617     DOI: 10.1152/jn.00367.2006

Source DB:  PubMed          Journal:  J Neurophysiol        ISSN: 0022-3077            Impact factor:   2.714


  53 in total

1.  Multiple models to capture the variability in biological neurons and networks.

Authors:  Eve Marder; Adam L Taylor
Journal:  Nat Neurosci       Date:  2011-02       Impact factor: 24.884

2.  Computational approaches to neuronal network analysis.

Authors:  Astrid A Prinz
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-08-12       Impact factor: 6.237

3.  Two computational regimes of a single-compartment neuron separated by a planar boundary in conductance space.

Authors:  Brian Nils Lundstrom; Sungho Hong; Matthew H Higgs; Adrienne L Fairhall
Journal:  Neural Comput       Date:  2008-05       Impact factor: 2.026

4.  Parameter sensitivity analysis in electrophysiological models using multivariable regression.

Authors:  Eric A Sobie
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

5.  Different roles of related currents in fast and slow spiking of model neurons from two phyla.

Authors:  En Hong; Fatma Gurel Kazanci; Astrid A Prinz
Journal:  J Neurophysiol       Date:  2008-08-20       Impact factor: 2.714

6.  Experimentally guided modelling of dendritic excitability in rat neocortical pyramidal neurones.

Authors:  Naomi Keren; Dan Bar-Yehuda; Alon Korngreen
Journal:  J Physiol       Date:  2009-01-26       Impact factor: 5.182

7.  Correlations in ion channel expression emerge from homeostatic tuning rules.

Authors:  Timothy O'Leary; Alex H Williams; Jonathan S Caplan; Eve Marder
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

8.  Cell types, network homeostasis, and pathological compensation from a biologically plausible ion channel expression model.

Authors:  Timothy O'Leary; Alex H Williams; Alessio Franci; Eve Marder
Journal:  Neuron       Date:  2014-05-21       Impact factor: 17.173

9.  Real-time kinetic modeling of voltage-gated ion channels using dynamic clamp.

Authors:  Lorin S Milescu; Tadashi Yamanishi; Krzysztof Ptak; Murtaza Z Mogri; Jeffrey C Smith
Journal:  Biophys J       Date:  2008-03-28       Impact factor: 4.033

Review 10.  Variability, compensation, and modulation in neurons and circuits.

Authors:  Eve Marder
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

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