Literature DB >> 16682783

Crystallization and preliminary X-ray analysis of an exotype alginate lyase Atu3025 from Agrobacterium tumefaciens strain C58, a member of polysaccharide lyase family 15.

Akihito Ochiai1, Masayuki Yamasaki, Bunzo Mikami, Wataru Hashimoto, Kousaku Murata.   

Abstract

Almost all alginate lyases depolymerize alginate in an endolytical fashion via a beta-elimination reaction. The alginate lyase Atu3025 from Agrobacterium tumefaciens strain C58, consisting of 776 amino-acid residues, is a novel exotype alginate lyase classified into polysaccharide lyase family 15. The enzyme was crystallized at 293 K by sitting-drop vapour diffusion with polyethylene glycol 4000 as a precipitant. Preliminary X-ray analysis showed that the Atu3025 crystal belonged to space group P2(1) and diffracted to 2.8 angstroms resolution, with unit-cell parameters a = 107.7, b = 108.3, c = 149.5 angstroms, beta = 91.5 degrees.

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Year:  2006        PMID: 16682783      PMCID: PMC2219967          DOI: 10.1107/S1744309106014333

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  22 in total

1.  Crystal structure of alginate lyase A1-III complexed with trisaccharide product at 2.0 A resolution.

Authors:  H J Yoon; W Hashimoto; O Miyake; K Murata; B Mikami
Journal:  J Mol Biol       Date:  2001-03-16       Impact factor: 5.469

2.  Evidence for a novel Chlorella virus-encoded alginate lyase.

Authors:  K Suda; Y Tanji; K Hori; H Unno
Journal:  FEMS Microbiol Lett       Date:  1999-11-01       Impact factor: 2.742

3.  Molecular identification of oligoalginate lyase of Sphingomonas sp. strain A1 as one of the enzymes required for complete depolymerization of alginate.

Authors:  W Hashimoto; O Miyake; K Momma; S Kawai; K Murata
Journal:  J Bacteriol       Date:  2000-08       Impact factor: 3.490

4.  Algal-lytic activities encoded by Chlorella virus CVK2.

Authors:  I Sugimoto; S Hiramatsu; D Murakami; M Fujie; S Usami; T Yamada
Journal:  Virology       Date:  2000-11-10       Impact factor: 3.616

Review 5.  ALGINATE LYASE: review of major sources and enzyme characteristics, structure-function analysis, biological roles, and applications.

Authors:  T Y Wong; L A Preston; N L Schiller
Journal:  Annu Rev Microbiol       Date:  2000       Impact factor: 15.500

Review 6.  Alginate dressings in surgery and wound management--Part 1.

Authors:  S Thomas
Journal:  J Wound Care       Date:  2000-02       Impact factor: 2.072

7.  Molecular identification of Sphingomonas sp. A1 alginate lyase (A1-IV') as a member of novel polysaccharide lyase family 15 and implications in alginate lyase evolution.

Authors:  Wataru Hashimoto; Osamu Miyake; Akihito Ochiai; Kousaku Murata
Journal:  J Biosci Bioeng       Date:  2005-01       Impact factor: 2.894

8.  cDNA cloning of an alginate lyase from abalone, Haliotis discus hannai.

Authors:  Eri Shimizu; Takao Ojima; Kiyoyoshi Nishita
Journal:  Carbohydr Res       Date:  2003-11-21       Impact factor: 2.104

9.  Enzymatically depolymerized alginate oligomers that cause cytotoxic cytokine production in human mononuclear cells.

Authors:  Yoshiko Iwamoto; Xu Xu; Tadashi Tamura; Tatsuya Oda; Tsuyoshi Muramatsu
Journal:  Biosci Biotechnol Biochem       Date:  2003-02       Impact factor: 2.043

10.  An exotype alginate lyase in Sphingomonas sp. A1: overexpression in Escherichia coli, purification, and characterization of alginate lyase IV (A1-IV).

Authors:  Osamu Miyake; Wataru Hashimoto; Kousaku Murata
Journal:  Protein Expr Purif       Date:  2003-05       Impact factor: 1.650

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  1 in total

1.  Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens.

Authors:  Akihito Ochiai; Masayuki Yamasaki; Bunzo Mikami; Wataru Hashimoto; Kousaku Murata
Journal:  J Biol Chem       Date:  2010-05-27       Impact factor: 5.157

  1 in total

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