Literature DB >> 16672520

Isolation and characterization of a new Clostridium sp. that performs effective cellulosic waste digestion in a thermophilic methanogenic bioreactor.

Hatsumi Shiratori1, Hironori Ikeno, Shohei Ayame, Naoaki Kataoka, Akiko Miya, Kuniaki Hosono, Teruhiko Beppu, Kenji Ueda.   

Abstract

A methanogenic bioreactor that utilized wastepaper was developed and operated at 55 degrees C. Microbial community structure analysis showed the presence of a group of clostridia that specifically occurred during the period of high fermentation efficiency. To isolate the effective cellulose digester, the sludge that exhibited high fermentation efficiency was inoculated into a synthetic medium that contained cellulose powder as the sole carbon source and was successively cultivated. A comprehensive 16S rRNA gene sequencing study revealed that the enriched culture contained various clostridia that had diverse phylogenetic positions. The microorganisms were further enriched by successive cultivation with filter paper as the substrate, as well as the bait carrier. A resultant isolate, strain EBR45 (= Clostridium sp. strain NBRC101661), was a new member of the order Clostridiales phylogenetically and physiologically related to Clostridium thermocellum and Clostridium straminisolvens. Specific PCR-based monitoring demonstrated that strain EBR45 specifically occurred during the high fermentation efficiency period in the original methanogenic sludge. Strain EBR45 effectively digested office paper in its pure cultivation system with a synthetic medium.

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Year:  2006        PMID: 16672520      PMCID: PMC1472344          DOI: 10.1128/AEM.72.5.3702-3709.2006

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  15 in total

1.  Cellulolytic activity in leachate during leach-bed anaerobic digestion of municipal solid waste.

Authors:  T E Lai; A Nopharatana; P C Pullammanappallil; W P Clarke
Journal:  Bioresour Technol       Date:  2001-12       Impact factor: 9.642

Review 2.  Applications of the anaerobic digestion process.

Authors:  Irini Angelidaki; Lars Ellegaard; Birgitte Kioer Ahring
Journal:  Adv Biochem Eng Biotechnol       Date:  2003       Impact factor: 2.635

3.  Characteristics of carbohydrate degradation and the rate-limiting step in anaerobic digestion.

Authors:  T Noike; G Endo; J E Chang; J Yaguchi; J Matsumoto
Journal:  Biotechnol Bioeng       Date:  1985-10       Impact factor: 4.530

4.  WWW-query: an on-line retrieval system for biological sequence banks.

Authors:  G Perrière; M Gouy
Journal:  Biochimie       Date:  1996       Impact factor: 4.079

5.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

6.  Bacterial populations colonizing and degrading rice straw in anoxic paddy soil.

Authors:  S Weber; S Stubner; R Conrad
Journal:  Appl Environ Microbiol       Date:  2001-03       Impact factor: 4.792

7.  Phylogenetic analysis of anaerobic thermophilic bacteria: aid for their reclassification.

Authors:  F A Rainey; N L Ward; H W Morgan; R Toalster; E Stackebrandt
Journal:  J Bacteriol       Date:  1993-08       Impact factor: 3.490

8.  Isolation and characterization of a new bacterium carboxylating phenol to benzoic acid under anaerobic conditions.

Authors:  T Li; J G Bisaillon; R Villemur; L Létourneau; K Bernard; F Lépine; R Beaudet
Journal:  J Bacteriol       Date:  1996-05       Impact factor: 3.490

9.  Identification, detection, and spatial resolution of Clostridium populations responsible for cellulose degradation in a methanogenic landfill leachate bioreactor.

Authors:  P C Burrell; C O'Sullivan; H Song; W P Clarke; L L Blackall
Journal:  Appl Environ Microbiol       Date:  2004-04       Impact factor: 4.792

10.  The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis.

Authors:  J R Cole; B Chai; R J Farris; Q Wang; S A Kulam; D M McGarrell; G M Garrity; J M Tiedje
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

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  21 in total

1.  Growth and expression of relevant metabolic genes of Clostridium thermocellum cultured on lignocellulosic residues.

Authors:  Vanessa O Leitão; Eliane F Noronha; Brenda R Camargo; Pedro R V Hamann; Andrei S Steindorff; Betania F Quirino; Marcelo Valle de Sousa; Cirano J Ulhoa; Carlos R Felix
Journal:  J Ind Microbiol Biotechnol       Date:  2017-02-08       Impact factor: 3.346

2.  Diversity of bacteria and glycosyl hydrolase family 48 genes in cellulolytic consortia enriched from thermophilic biocompost.

Authors:  Javier A Izquierdo; Maria V Sizova; Lee R Lynd
Journal:  Appl Environ Microbiol       Date:  2010-04-09       Impact factor: 4.792

Review 3.  The Fibrobacteres: an important phylum of cellulose-degrading bacteria.

Authors:  Emma Ransom-Jones; David L Jones; Alan J McCarthy; James E McDonald
Journal:  Microb Ecol       Date:  2012-01-03       Impact factor: 4.552

4.  Cellulose- and xylan-degrading thermophilic anaerobic bacteria from biocompost.

Authors:  M V Sizova; J A Izquierdo; N S Panikov; L R Lynd
Journal:  Appl Environ Microbiol       Date:  2011-02-11       Impact factor: 4.792

5.  Temporal and spatial constraints on community assembly during microbial colonization of wood in seawater.

Authors:  Dimitri Kalenitchenko; Sonja K Fagervold; Audrey M Pruski; Gilles Vétion; Mustafa Yücel; Nadine Le Bris; Pierre E Galand
Journal:  ISME J       Date:  2015-04-17       Impact factor: 10.302

6.  Role and Function of LitR, an Adenosyl B12-Bound Light-Sensitive Regulator of Bacillus megaterium QM B1551, in Regulation of Carotenoid Production.

Authors:  Hideaki Takano; Kou Mise; Kenta Hagiwara; Naoya Hirata; Shoko Watanabe; Minami Toriyabe; Hatsumi Shiratori-Takano; Kenji Ueda
Journal:  J Bacteriol       Date:  2015-04-27       Impact factor: 3.490

7.  Isolation of bacteria whose growth is dependent on high levels of CO2 and implications of their potential diversity.

Authors:  Kenji Ueda; Yudai Tagami; Yuka Kamihara; Hatsumi Shiratori; Hideaki Takano; Teruhiko Beppu
Journal:  Appl Environ Microbiol       Date:  2008-05-16       Impact factor: 4.792

8.  Complete Genome Sequence of Clostridium clariflavum DSM 19732.

Authors:  Javier A Izquierdo; Lynne Goodwin; Karen W Davenport; Hazuki Teshima; David Bruce; Chris Detter; Roxanne Tapia; Shunsheng Han; Miriam Land; Loren Hauser; Cynthia D Jeffries; James Han; Sam Pitluck; Matt Nolan; Amy Chen; Marcel Huntemann; Konstantinos Mavromatis; Natalia Mikhailova; Konstantinos Liolios; Tanja Woyke; Lee R Lynd
Journal:  Stand Genomic Sci       Date:  2012-03-12

9.  Clostridium clariflavum: Key Cellulosome Players Are Revealed by Proteomic Analysis.

Authors:  Lior Artzi; Ely Morag; Yoav Barak; Raphael Lamed; Edward A Bayer
Journal:  MBio       Date:  2015-05-19       Impact factor: 7.867

10.  Cellulosomics of the cellulolytic thermophile Clostridium clariflavum.

Authors:  Lior Artzi; Bareket Dassa; Ilya Borovok; Melina Shamshoum; Raphael Lamed; Edward A Bayer
Journal:  Biotechnol Biofuels       Date:  2014-07-01       Impact factor: 6.040

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