Literature DB >> 16666259

DNA Methylation Occurred around Lowly Expressed Genes of Plastid DNA during Tomato Fruit Development.

J Ngernprasirtsiri1, H Kobayashi, T Akazawa.   

Abstract

We have analyzed DNA methylation of plastid DNA from fully ripened red fruits, green mature fruits, and green leaves of tomato (Lycopersicon esculentum var. Firstmore). Essentially identical restriction profiles were obtained between chromoplast and chloroplast DNAs by EcoRI digestion. BstNI/EcoRII and HpaII/MspI are pairs of isoschizomers that can discriminate between methylated and unmethylated DNAs. These endonucleases produced different restriction patterns of plastid DNAs from tomato fruits compared to tomato leaves. Moreover, we have found from Southern blots that methylation was not detected in DNA fragments containing certain genes that are actively expressed in chromoplasts, whereas DNA fragments bearing genes that are barely transcribed in chromoplasts are methylated.

Entities:  

Year:  1988        PMID: 16666259      PMCID: PMC1055517          DOI: 10.1104/pp.88.1.16

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  11 in total

1.  Detection of specific sequences among DNA fragments separated by gel electrophoresis.

Authors:  E M Southern
Journal:  J Mol Biol       Date:  1975-11-05       Impact factor: 5.469

2.  Molecular basis of maternal inheritance.

Authors:  R Sager; D Lane
Journal:  Proc Natl Acad Sci U S A       Date:  1972-09       Impact factor: 11.205

3.  Light-induced transformation of amyloplasts into chloroplasts in potato tubers.

Authors:  Y S Zhu; D L Merkle-Lehman; S D Kung
Journal:  Plant Physiol       Date:  1984-05       Impact factor: 8.340

Review 4.  DNA methylation and gene activity.

Authors:  W Doerfler
Journal:  Annu Rev Biochem       Date:  1983       Impact factor: 23.643

Review 5.  DNA methylation in eukaryotic cells.

Authors:  A Razin; H Cedar
Journal:  Int Rev Cytol       Date:  1984

6.  Amyloplast nucleoids in sycamore cells and presence in amyloplast DNA of homologous sequences to chloroplast genes.

Authors:  D Macherel; H Kobayashi; T Akazawa; S Kawano; T Kuroiwa
Journal:  Biochem Biophys Res Commun       Date:  1985-11-27       Impact factor: 3.575

7.  Developmental regulation of cytosine methylation in the nuclear ribosomal RNA genes of Pisum sativum.

Authors:  J C Watson; L S Kaufman; W F Thompson
Journal:  J Mol Biol       Date:  1987-01-05       Impact factor: 5.469

8.  Restriction enzyme analysis of tomato chloroplast and chromoplast DNA.

Authors:  C M Hunt; R C Hardison; C D Boyer
Journal:  Plant Physiol       Date:  1986-12       Impact factor: 8.340

9.  Nuclear gene-regulated expression of chloroplast genes for coupling factor one in maize.

Authors:  H Kobayashi; L Bogorad; C D Miles
Journal:  Plant Physiol       Date:  1987-11       Impact factor: 8.340

10.  Localization of Galactolipid Biosynthesis in Etioplasts Isolated from Dark-Grown Wheat (Triticum aestivum L.).

Authors:  A S Sandelius; E Selstam
Journal:  Plant Physiol       Date:  1984-12       Impact factor: 8.340

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  18 in total

1.  Restriction site and genetic map of Cucurbita pepo chloroplast DNA.

Authors:  H Lim; I Gounaris; R C Hardison; C D Boyer
Journal:  Curr Genet       Date:  1990-10       Impact factor: 3.886

2.  Chromoplast formation during tomato fruit ripening. No evidence for plastid DNA methylation.

Authors:  M R Marano; N Carrillo
Journal:  Plant Mol Biol       Date:  1991-01       Impact factor: 4.076

3.  Analysis of gene expression in amyloplasts of potato tubers.

Authors:  Mario Brosch; Kirsten Krause; Jon Falk; Karin Krupinska
Journal:  Planta       Date:  2007-08-21       Impact factor: 4.116

4.  Tissue culture-induced DNA methylation polymorphisms in repetitive DNA of tomato calli and regenerated plants.

Authors:  M J Smulders; W Rus-Kortekaas; B Vosman
Journal:  Theor Appl Genet       Date:  1995-12       Impact factor: 5.699

Review 5.  New insights into plastid nucleoid structure and functionality.

Authors:  Karin Krupinska; Joanna Melonek; Kirsten Krause
Journal:  Planta       Date:  2012-12-05       Impact factor: 4.116

6.  Transcriptional regulation and DNA methylation of nuclear genes for photosynthesis in nongreen plant cells.

Authors:  J Ngernprasirtsiri; H Kobayashi; T Akazawa
Journal:  Proc Natl Acad Sci U S A       Date:  1989-10       Impact factor: 11.205

7.  Constitutive Transcription and Stable RNA Accumulation in Plastids during the Conversion of Chloroplasts to Chromoplasts in Ripening Tomato Fruits.

Authors:  M R Marano; N Carrillo
Journal:  Plant Physiol       Date:  1992-11       Impact factor: 8.340

8.  Plastid DNA in developing maize endosperm : genome structure, methylation, and transcript accumulation patterns.

Authors:  A J McCullough; J Kangasjarvi; B G Gengenbach; R J Jones
Journal:  Plant Physiol       Date:  1992-10       Impact factor: 8.340

9.  Characterization and expression of rpoC2 in CMS and fertile lines of sorghum.

Authors:  Z Chen; K F Schertz; J E Mullet; A DuBell; G E Hart
Journal:  Plant Mol Biol       Date:  1995-08       Impact factor: 4.076

10.  Plastid DNA sequence homologies in the tobacco nuclear genome.

Authors:  M A Ayliffe; J N Timmis
Journal:  Mol Gen Genet       Date:  1992-12
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