Literature DB >> 16650908

DNA topoisomerase V: a new fold of mysterious origin.

Patrick Forterre1.   

Abstract

Although all other topoisomerases have a broad phylogenetic distribution, DNA topoisomerase V, the major component of the ThermoFidelase sequencing kit, is presently only known in a single species--the archaeon Methanopyrus kandleri. Resolution of the structure of this enzyme by Taneja and co-workers now reveals that this atypical topoisomerase has no structural similarity with other proteins. So, where did it come from? It is my contention that Topo V, and many other orphan proteins, could have a viral origin.

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Year:  2006        PMID: 16650908     DOI: 10.1016/j.tibtech.2006.04.006

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  17 in total

1.  Unique genes in giant viruses: regular substitution pattern and anomalously short size.

Authors:  Hiroyuki Ogata; Jean-Michel Claverie
Journal:  Genome Res       Date:  2007-07-25       Impact factor: 9.043

2.  Topoisomerase V relaxes supercoiled DNA by a constrained swiveling mechanism.

Authors:  Bhupesh Taneja; Bernhard Schnurr; Alexei Slesarev; John F Marko; Alfonso Mondragón
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-05       Impact factor: 11.205

3.  Biochemical characterization of the topoisomerase domain of Methanopyrus kandleri topoisomerase V.

Authors:  Rakhi Rajan; Amy K Osterman; Alexandra T Gast; Alfonso Mondragón
Journal:  J Biol Chem       Date:  2014-08-18       Impact factor: 5.157

Review 4.  All tangled up: how cells direct, manage and exploit topoisomerase function.

Authors:  Seychelle M Vos; Elsa M Tretter; Bryan H Schmidt; James M Berger
Journal:  Nat Rev Mol Cell Biol       Date:  2011-11-23       Impact factor: 94.444

5.  Genome and proteome of Campylobacter jejuni bacteriophage NCTC 12673.

Authors:  Andrew M Kropinski; Denis Arutyunov; Mary Foss; Anna Cunningham; Wen Ding; Amit Singh; Andrey R Pavlov; Matthew Henry; Stephane Evoy; John Kelly; Christine M Szymanski
Journal:  Appl Environ Microbiol       Date:  2011-09-30       Impact factor: 4.792

6.  Structures of minimal catalytic fragments of topoisomerase V reveals conformational changes relevant for DNA binding.

Authors:  Rakhi Rajan; Bhupesh Taneja; Alfonso Mondragón
Journal:  Structure       Date:  2010-07-14       Impact factor: 5.006

Review 7.  Studies of bacterial topoisomerases I and III at the single-molecule level.

Authors:  Ksenia Terekhova; John F Marko; Alfonso Mondragón
Journal:  Biochem Soc Trans       Date:  2013-04       Impact factor: 5.407

8.  RNA-Seq analyses reveal the order of tRNA processing events and the maturation of C/D box and CRISPR RNAs in the hyperthermophile Methanopyrus kandleri.

Authors:  Andreas A H Su; Vanessa Tripp; Lennart Randau
Journal:  Nucleic Acids Res       Date:  2013-04-25       Impact factor: 16.971

Review 9.  Phylogenomics of DNA topoisomerases: their origin and putative roles in the emergence of modern organisms.

Authors:  Patrick Forterre; Danièle Gadelle
Journal:  Nucleic Acids Res       Date:  2009-02-09       Impact factor: 16.971

10.  A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya.

Authors:  Céline Brochier-Armanet; Simonetta Gribaldo; Patrick Forterre
Journal:  Biol Direct       Date:  2008-12-23       Impact factor: 4.540

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