Literature DB >> 16644292

Defining the salt effect on human RAD51 activities.

Kang-Sup Shim1, Christoph Schmutte, Kristine Yoder, Richard Fishel.   

Abstract

Previous work by Sung and colleagues identified unusual salt requirements for hRAD51 strand exchange compared to RecA [S. Sigurdsson, K. Trujillo, B. Song, S. Stratton, P. Sung, Basis for avid homologous DNA strand exchange by human Rad51 and RPA, J. Biol. Chem. 276 (2001) 8798-8806]. Later studies showed that this salt [(NH4)2SO4] appeared to enhance the ability of hRAD51 to distinguish ssDNA from dsDNA [Y. Liu, A.Z. Stasiak, J.Y. Masson, M.J. McIlwraith, A. Stasiak, S.C. West, Conformational changes modulate the activity of human RAD51 protein, J. Mol. Biol. 337 (2004) 817-827]. The mechanism of this salt effect remains enigmatic. Here, we detail the properties of several neutral salts on hRAD51 activities. We found that the cation identity correlated with the stimulatory effect of these neutral salts on hRAD51 ATPase and strand exchange activities. The salt effect appears to be related to the size of the cation, which may be largely mimicked with the cesium ion. These results are consistent with the hypothesis that stimulating cations induce an important conformation and/or transition state in hRAD51. In the presence of an optimal ammonium-based salt (NaNH4HPO4), hRAD51 mediated strand exchange was successfully performed using a simplified protocol. We confirmed and extend the observation that efficient strand exchange correlated with preferential binding of ssDNA over dsDNA. In addition we observed an induced stability of the hRAD51-DNA complex in the presence of ATP that becomes unstable following ATP hydrolysis (the ADP form or nucleotide free form). These salt-induced characteristics of hRAD51 increasingly resemble RecA-mediated recombinase activities, which should help in dissecting the mechanism of these proteins in homologous recombination.

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Year:  2006        PMID: 16644292     DOI: 10.1016/j.dnarep.2006.03.006

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  15 in total

1.  RAD51 protein ATP cap regulates nucleoprotein filament stability.

Authors:  Ravindra Amunugama; Yujiong He; Smaranda Willcox; Robert A Forties; Kang-Sup Shim; Ralf Bundschuh; Yu Luo; Jack Griffith; Richard Fishel
Journal:  J Biol Chem       Date:  2012-01-24       Impact factor: 5.157

2.  Visualization and quantification of nascent RAD51 filament formation at single-monomer resolution.

Authors:  Andrea Candelli; Jan Thomas Holthausen; Martin Depken; Ineke Brouwer; Mariëlla A M Franker; Margherita Marchetti; Iddo Heller; Stéphanie Bernard; Edwige B Garcin; Mauro Modesti; Claire Wyman; Gijs J L Wuite; Erwin J G Peterman
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-06       Impact factor: 11.205

3.  Potassium chloride and rare earth elements improve plant growth and increase the frequency of the Agrobacterium tumefaciens-mediated plant transformation.

Authors:  Alex Boyko; Aki Matsuoka; Igor Kovalchuk
Journal:  Plant Cell Rep       Date:  2010-12-05       Impact factor: 4.570

4.  Evolution of cation binding in the active sites of P-loop nucleoside triphosphatases in relation to the basic catalytic mechanism.

Authors:  Daria N Shalaeva; Dmitry A Cherepanov; Michael Y Galperin; Andrey V Golovin; Armen Y Mulkidjanian
Journal:  Elife       Date:  2018-12-11       Impact factor: 8.140

5.  Tyrosine phosphorylation stimulates activity of human RAD51 recombinase through altered nucleoprotein filament dynamics.

Authors:  Shyamal Subramanyam; Mohammed Ismail; Ipshita Bhattacharya; Maria Spies
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-26       Impact factor: 11.205

6.  High frequency Agrobacterium tumefaciens-mediated plant transformation induced by ammonium nitrate.

Authors:  Alex Boyko; Aki Matsuoka; Igor Kovalchuk
Journal:  Plant Cell Rep       Date:  2009-02-17       Impact factor: 4.570

7.  The HsRAD51B-HsRAD51C stabilizes the HsRAD51 nucleoprotein filament.

Authors:  Ravindra Amunugama; Joanna Groden; Richard Fishel
Journal:  DNA Repair (Amst)       Date:  2013-06-28

8.  Expression, Purification, and Biochemical Evaluation of Human RAD51 Protein.

Authors:  Shyamal Subramanyam; Maria Spies
Journal:  Methods Enzymol       Date:  2018-01-09       Impact factor: 1.600

9.  Molecular modeling and molecular dynamics simulations of recombinase Rad51.

Authors:  Yuichi Kokabu; Mitsunori Ikeguchi
Journal:  Biophys J       Date:  2013-04-02       Impact factor: 4.033

10.  Subunit interface residues F129 and H294 of human RAD51 are essential for recombinase function.

Authors:  Ravindra Amunugama; Richard Fishel
Journal:  PLoS One       Date:  2011-08-12       Impact factor: 3.240

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