Literature DB >> 16644089

Decoding errors and the involvement of the E-site.

Knud H Nierhaus1.   

Abstract

Life depends on the faithful translation of the genetic information into proteins. Ribosomes have developed remarkable mechanisms to ensure the accurate synthesis of proteins. In the first part of this review various types of ribosomal errors and their importance for cell-life are surveyed, while in the second part two important aspects of the ribosomal E-site for the accuracy of translation are considered: (i) The fact that usually misincorporations are not harmful for the cell, since only one in about 400 misincorporations will affect the structure and/or function of a protein, is a function of the E-site. (ii) In contrast, an extremely harmful translational error is a loss of the reading frame, resulting in an immediate loss of the genetic information. Maintenance of the reading frame is one of the most remarkable achievements of the ribosome; only once in about 30,000 elongation cycles is the reading frame lost. A cognate tRNA at the E-site is an essential prerequisite for this high precision.

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Year:  2006        PMID: 16644089     DOI: 10.1016/j.biochi.2006.02.009

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  21 in total

1.  Allosteric vs. spontaneous exit-site (E-site) tRNA dissociation early in protein synthesis.

Authors:  Chunlai Chen; Benjamin Stevens; Jaskiran Kaur; Zeev Smilansky; Barry S Cooperman; Yale E Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

2.  Single-molecule study of ribosome hierarchic dynamics at the peptidyl transferase center.

Authors:  Mediha Esra Altuntop; Cindy Tu Ly; Yuhong Wang
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

3.  Anticodon loop mutations perturb reading frame maintenance by the E site tRNA.

Authors:  Christina L Sanders; Kristin J Lohr; Holly L Gambill; Ryan B Curran; James F Curran
Journal:  RNA       Date:  2008-07-30       Impact factor: 4.942

4.  Tracking fluctuation hotspots on the yeast ribosome through the elongation cycle.

Authors:  Suna P Gulay; Sujal Bista; Amitabh Varshney; Serdal Kirmizialtin; Karissa Y Sanbonmatsu; Jonathan D Dinman
Journal:  Nucleic Acids Res       Date:  2017-05-05       Impact factor: 16.971

5.  Functional Insights into the Adjacent Stem-Loop in Honey Bee Dicistroviruses That Promotes Internal Ribosome Entry Site-Mediated Translation and Viral Infection

Authors:  Hilda H T Au; Valentina M Elspass; Eric Jan
Journal:  J Virol       Date:  2018-01-02       Impact factor: 5.103

Review 6.  Fidelity at the molecular level: lessons from protein synthesis.

Authors:  Hani S Zaher; Rachel Green
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

7.  RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs.

Authors:  Dori M Landry; Marla I Hertz; Sunnie R Thompson
Journal:  Genes Dev       Date:  2009-12-01       Impact factor: 11.361

8.  Roles of the negatively charged N-terminal extension of Saccharomyces cerevisiae ribosomal protein S5 revealed by characterization of a yeast strain containing human ribosomal protein S5.

Authors:  Oleksandr Galkin; Amber A Bentley; Sujatha Gupta; Beth-Ann Compton; Barsanjit Mazumder; Terri Goss Kinzy; William C Merrick; Maria Hatzoglou; Tatyana V Pestova; Christopher U T Hellen; Anton A Komar
Journal:  RNA       Date:  2007-09-27       Impact factor: 4.942

9.  FSscan: a mechanism-based program to identify +1 ribosomal frameshift hotspots.

Authors:  Pei-Yu Liao; Yong Seok Choi; Kelvin H Lee
Journal:  Nucleic Acids Res       Date:  2009-11       Impact factor: 16.971

10.  Yeast strains with N-terminally truncated ribosomal protein S5: implications for the evolution, structure and function of the Rps5/Rps7 proteins.

Authors:  Thomas Lumsden; Amber A Bentley; William Beutler; Arnab Ghosh; Oleksandr Galkin; Anton A Komar
Journal:  Nucleic Acids Res       Date:  2009-12-06       Impact factor: 16.971

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