Literature DB >> 16641492

Ligand binding by TPR domains.

Aitziber L Cortajarena1, Lynne Regan.   

Abstract

Tetratricopeptide repeat (TPR) domains bind specific peptide ligands and are thought to mediate protein-protein interactions in a variety of biological systems. Here we compare peptide ligand-binding by several different TPR domains. We present specific examples that demonstrate that TPR domains typically undergo little or no structural rearrangement upon ligand binding. Our data suggest that, contrary to a recent proposal, coupled folding and binding is not the common mechanism of ligand recognition by TPR domains.

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Year:  2006        PMID: 16641492      PMCID: PMC2242500          DOI: 10.1110/ps.062092506

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  16 in total

1.  Structure of TPR domain-peptide complexes: critical elements in the assembly of the Hsp70-Hsp90 multichaperone machine.

Authors:  C Scheufler; A Brinker; G Bourenkov; S Pegoraro; L Moroder; H Bartunik; F U Hartl; I Moarefi
Journal:  Cell       Date:  2000-04-14       Impact factor: 41.582

Review 2.  TPR proteins: the versatile helix.

Authors:  Luca D D'Andrea; Lynne Regan
Journal:  Trends Biochem Sci       Date:  2003-12       Impact factor: 13.807

3.  Design of stable alpha-helical arrays from an idealized TPR motif.

Authors:  Ewan R G Main; Yong Xiong; Melanie J Cocco; Luca D'Andrea; Lynne Regan
Journal:  Structure       Date:  2003-05       Impact factor: 5.006

4.  SWISS-MODEL: An automated protein homology-modeling server.

Authors:  Torsten Schwede; Jürgen Kopp; Nicolas Guex; Manuel C Peitsch
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

5.  Protein design to understand peptide ligand recognition by tetratricopeptide repeat proteins.

Authors:  Aitziber L Cortajarena; Tommi Kajander; Weilan Pan; Melanie J Cocco; Lynne Regan
Journal:  Protein Eng Des Sel       Date:  2004-05-27       Impact factor: 1.650

Review 6.  Tetratrico peptide repeat interactions: to TPR or not to TPR?

Authors:  J R Lamb; S Tugendreich; P Hieter
Journal:  Trends Biochem Sci       Date:  1995-07       Impact factor: 13.807

7.  Ligand discrimination by TPR domains. Relevance and selectivity of EEVD-recognition in Hsp70 x Hop x Hsp90 complexes.

Authors:  Achim Brinker; Clemens Scheufler; Florian Von Der Mulbe; Burkhard Fleckenstein; Christian Herrmann; Gunther Jung; Ismail Moarefi; F Ulrich Hartl
Journal:  J Biol Chem       Date:  2002-03-04       Impact factor: 5.157

8.  Structure of the large FK506-binding protein FKBP51, an Hsp90-binding protein and a component of steroid receptor complexes.

Authors:  Cindy R Sinars; Joyce Cheung-Flynn; Ronald A Rimerman; Jonathan G Scammell; David F Smith; Jon Clardy
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-21       Impact factor: 11.205

9.  1H, 15N and 13C resonance assignments of the tetratricopeptide repeat (TPR) domain of hSGT.

Authors:  Ming-Tao Pai; Chih-Sheng Yang; Shiou-Ru Tzeng; Chung Wang; Jya-Wei Cheng
Journal:  J Biomol NMR       Date:  2003-08       Impact factor: 2.835

10.  Molecular recognition via coupled folding and binding in a TPR domain.

Authors:  Matthew J Cliff; Mark A Williams; John Brooke-Smith; David Barford; John E Ladbury
Journal:  J Mol Biol       Date:  2005-01-18       Impact factor: 5.469

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  34 in total

1.  The 1.75 Å resolution structure of fission protein Fis1 from Saccharomyces cerevisiae reveals elusive interactions of the autoinhibitory domain.

Authors:  James E Tooley; Victor Khangulov; Jonathan P B Lees; Jamie L Schlessman; Maria C Bewley; Annie Heroux; Jürgen Bosch; R Blake Hill
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-10-25

2.  Optimization of designed armadillo repeat proteins by molecular dynamics simulations and NMR spectroscopy.

Authors:  Pietro Alfarano; Gautham Varadamsetty; Christina Ewald; Fabio Parmeggiani; Riccardo Pellarin; Oliver Zerbe; Andreas Plückthun; Amedeo Caflisch
Journal:  Protein Sci       Date:  2012-09       Impact factor: 6.725

3.  Creating novel proteins by combining design and selection.

Authors:  Tijana Z Grove; Michael Hands; Lynne Regan
Journal:  Protein Eng Des Sel       Date:  2010-03-19       Impact factor: 1.650

4.  Stimuli-responsive smart gels realized via modular protein design.

Authors:  Tijana Z Grove; Chinedum O Osuji; Jason D Forster; Eric R Dufresne; Lynne Regan
Journal:  J Am Chem Soc       Date:  2010-10-13       Impact factor: 15.419

5.  A direct interaction between the Utp6 half-a-tetratricopeptide repeat domain and a specific peptide in Utp21 is essential for efficient pre-rRNA processing.

Authors:  Erica A Champion; Bennett H Lane; Meredith E Jackrel; Lynne Regan; Susan J Baserga
Journal:  Mol Cell Biol       Date:  2008-08-25       Impact factor: 4.272

6.  Redesign of a protein-peptide interaction: characterization and applications.

Authors:  Meredith E Jackrel; Roberto Valverde; Lynne Regan
Journal:  Protein Sci       Date:  2009-04       Impact factor: 6.725

7.  Key residues in Mycobacterium tuberculosis protein kinase G play a role in regulating kinase activity and survival in the host.

Authors:  Divya Tiwari; Rajnish Kumar Singh; Kasturi Goswami; Sunil Kumar Verma; Balaji Prakash; Vinay Kumar Nandicoori
Journal:  J Biol Chem       Date:  2009-07-28       Impact factor: 5.157

8.  Electrostatic interactions of Hsp-organizing protein tetratricopeptide domains with Hsp70 and Hsp90: computational analysis and protein engineering.

Authors:  Tommi Kajander; Jonathan N Sachs; Adrian Goldman; Lynne Regan
Journal:  J Biol Chem       Date:  2009-07-07       Impact factor: 5.157

9.  Comparison of the backbone dynamics of a natural and a consensus designed 3-TPR domain.

Authors:  Virginia A Jarymowycz; Aitziber L Cortajarena; Lynne Regan; Martin J Stone
Journal:  J Biomol NMR       Date:  2008-06-20       Impact factor: 2.835

10.  Chaperone ligand-discrimination by the TPR-domain protein Tah1.

Authors:  Stefan H Millson; Cara K Vaughan; Chao Zhai; Maruf M U Ali; Barry Panaretou; Peter W Piper; Laurence H Pearl; Chrisostomos Prodromou
Journal:  Biochem J       Date:  2008-07-15       Impact factor: 3.857

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