Literature DB >> 16636455

Mutational study on alphaGln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771.

Hiromi Takarada1, Yoshiaki Kawano, Kouichi Hashimoto, Hiroshi Nakayama, Shunsaku Ueda, Masafumi Yohda, Nobuo Kamiya, Naoshi Dohmae, Mizuo Maeda, Masafumi Odaka.   

Abstract

Nitrile hydratase (NHase) from Rhodococcus sp. N771 is a non-heme iron enzyme having post-translationally modified cysteine ligands, alphaCys112-SO2H and alphaCys114-SOH. We replaced alphaGln90, which is conserved in all known NHases and involved in the hydrogen-bond network around the catalytic center, with glutamic acid or asparagine. The kcat of alphaQ90E and alphaQ90N mutants decreased to 24% and 5% that of wild type respectively, but the effect of mutations on Km was not very significant. In both mutants, the alphaCys114-SOH modification appeared to be responsible for the catalysis as in native NHase. We crystallized the nitrosylated alphaQ90N mutant and determined its structure at a resolution of 1.43 A. The structure was basically identical to that of native nitrosylated NHase except for the mutated site and its vicinity. The structural difference between native and alphaQ90N mutant NHases suggested the importance of the hydrogen bond networks between alphaGln90 and the iron center for the catalytic activity.

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Year:  2006        PMID: 16636455     DOI: 10.1271/bbb.70.881

Source DB:  PubMed          Journal:  Biosci Biotechnol Biochem        ISSN: 0916-8451            Impact factor:   2.043


  7 in total

1.  A Protein-derived Oxygen Is the Source of the Amide Oxygen of Nitrile Hydratases.

Authors:  Micah T Nelp; Yang Song; Vicki H Wysocki; Vahe Bandarian
Journal:  J Biol Chem       Date:  2016-02-10       Impact factor: 5.157

2.  Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase.

Authors:  Yasuaki Yamanaka; Koichi Hashimoto; Akashi Ohtaki; Keiichi Noguchi; Masafumi Yohda; Masafumi Odaka
Journal:  J Biol Inorg Chem       Date:  2010-03-10       Impact factor: 3.358

3.  Insights into catalytic activity of industrial enzyme Co-nitrile hydratase. Docking studies of nitriles and amides.

Authors:  Lukasz Peplowski; Karina Kubiak; Wieslaw Nowak
Journal:  J Mol Model       Date:  2007-02-27       Impact factor: 1.810

4.  Molecular dynamics simulations of the photoactive protein nitrile hydratase.

Authors:  Karina Kubiak; Wieslaw Nowak
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

5.  Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile.

Authors:  Koichi Hashimoto; Hiroyuki Suzuki; Kayoko Taniguchi; Takumi Noguchi; Masafumi Yohda; Masafumi Odaka
Journal:  J Biol Chem       Date:  2008-10-23       Impact factor: 5.157

6.  Prediction of distal residue participation in enzyme catalysis.

Authors:  Heather R Brodkin; Nicholas A DeLateur; Srinivas Somarowthu; Caitlyn L Mills; Walter R Novak; Penny J Beuning; Dagmar Ringe; Mary Jo Ondrechen
Journal:  Protein Sci       Date:  2015-04-02       Impact factor: 6.725

7.  Spectroscopic and Computational Studies of Nitrile Hydratase: Insights into Geometric and Electronic Structure and the Mechanism of Amide Synthesis.

Authors:  Kenneth M Light; Yasuaki Yamanaka; Masafumi Odaka; Edward I Solomon
Journal:  Chem Sci       Date:  2015-07-30       Impact factor: 9.825

  7 in total

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